| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1648 |
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| Symbol | |
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| ID | 4252224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1948486 |
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| End bp | 1950753 |
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| Gene Length | 2268 bp |
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| Protein Length | 755 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638118260 |
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| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
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| Protein accession | YP_733781 |
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| Protein GI | 113969988 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000301737 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACA AAGATCTGGA AGTCACCTTA AATCTGGCGT TTCAGCAAGC CAGAGAGGCA
CGTCACGAGT ATATGACGGT TGAACATCTG TTATTGGCTC TGATCGACAA TCCTGCGGCT
CAAGAAGCGC TAATCGCCTG TGGAGCGAAT TTAGATAAAC TCAGAGATGA AGTAGCAAGC
TTTATCCAAC AAACCACCCC AATCATTGCG GATATGGATG ATGATAAAGA AACCCAGCCG
ACGCTTGGGT TTCAACGGGT GCTGCAACGC GCCGTTTTCC ATGTGCAGTC TTCGGGTCGC
AATGAAGTCA CTGGTGCCAA TGTGCTGGTG GCCATTTTTA GTGAGCAGGA ATCCCAAGCT
GTGTATCTGC TGCGTCGCAG CGACATCAGC CGTTTAGATG TGGTGAACTA TATTTCCCAT
GGTTTTTCAA AAAATGAGGA CAGCGACGCC CATCAAGATC ACGAACGCAT CGAAGATCAA
ACCGAAGCGG GTGAAGAGCG CAGTATGCTG TCGCAGTTTG CGAGCAATTT AAACCAGCTT
GCAAAACAAG GGATTATCGA CCCACTCATC GGCCGCGATC AAGAAATTGA ACGGGCAATT
CAAACCCTCT GCCGTCGCCG TAAGAATAAC CCGTTGTTAG TGGGTGAGGC TGGCGTGGGT
AAAACCGCGA TTGCCGAAGG TTTAGCCTAT CGAATCGTCA ACAATCAAGT GCCAGAGGTG
ATGTCGCAGG CGACTGTGTA TTCCCTCGAC TTAGGCTCCT TACTCGCAGG CACTAAATAT
CGTGGCGATT TTGAAAAACG TCTCAAGAGT CTGCTTAAGG AACTCAGCGC CGATAAACAC
GCCATTTTAT TTATCGATGA AATTCATACC ATTATTGGTG CGGGCGCTGC ATCGGGCGGG
GTGATGGATG CCTCTAATCT GCTAAAACCG TTACTATCGA GCGGTAATTT GCGTTGCATG
GGTTCGACTA CCTTCCAAGA ATATCAAAGC ATTTTTGAGA AAGATCGTGC ACTGGCGCGC
CGTTTCCAGA AGGTCGATAT CAATGAGCCT TCAGTGGCTG AAACCACAAA AATTCTTATG
GGGCTTAAGG CTAAGTACGA AGAGTACCAT GGAGTGCGTT ATACCCAAGC GGCGATTAAT
AGCGCGGCTG AGCTGTCGGC AAAACACATT AATGACCGGC ATTTACCCGA TAAAGCCATC
GATGTGATCG ATGAGGCGGG TGCGCGTATG GCGATGTTGC CACAGAGCAA ACGTAAGAAA
ACCATCGGTC AAGCCGAGAT CGAAACCATA GTGGCGAAGA TTGCCCGTAT TCCTGAAAAG
TCAGTCTCAG CGAGCGACAA GGATTTGCTG CGTAATCTTG AGCGCAACCT CAAGATGGTG
GTCTTTGGTC AAGATAAGGC GATTGAATCC TTAAGCTCGG CGATTCGATT ATCACGTAGT
GGGTTAGGTA CGGATAAAAA GCCTGTGGGT AGCTTCTTGT TTGCAGGCCC AACTGGGGTT
GGTAAGACAG AAGTGACCAA TCAGTTAGCC AGTTGTCTAG GGATGAAGCT GGTACGGTTT
GATATGTCTG AGTACATGGA AAGTCATACG GTATCTCGTT TGATTGGTGC TCCTCCTGGA
TACGTAGGAT ACGACCAAGG TGGCTTACTC ACGGATGCAG TGATTAAGAA TCCCCATTGC
GTGGTGCTGC TCGATGAAAT CGAAAAGGCT CACCCCGATG TCTATAACCT GTTGCTACAG
GTCATGGATC ACGGCACCTT GACCGATAAT AACGGTCGCA AGGCGGACTT TAGGCATGTC
ACTCTGGTGA TGACAACAAA CGCAGGGGTT CAGGAAACGA TCCGTAAGTC CATTGGGTTT
ACTCAGCAGG ATCATACCCA AGATGCCTTA TCGGAAATCA ATCGGGTATT CTCTCCTGAG
TTTCGCAACC GCTTAGATTC CATCATTTGG TTCAACCATT TAGATATGAC CATCATAGCC
AAGGTGGTCG ATAAATTCTT GGTGGAATTG CAGGCGCAGT TGGATGCGAA ACATGTGGTG
CTGGAAGTCA GCGATGAAGC CAGAACCTTA CTCGCCGAGA AAGGCTATGA TAAGAGCATG
GGCGCACGGC CAATGGCACG CGTAGTGACT GAGCTGATTA AACGCCCATT AGCCGATGCG
ATTCTCTTTG GCGAACTGGA GCATGGCGGT ATTGCCCATG TTGATGCCAA AGATGGTGAA
ATTGTTATCC ACACCGAACG CCATGAGAAG AGTACCACTA AGGCTTAA
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| Protein sequence | MLNKDLEVTL NLAFQQAREA RHEYMTVEHL LLALIDNPAA QEALIACGAN LDKLRDEVAS
FIQQTTPIIA DMDDDKETQP TLGFQRVLQR AVFHVQSSGR NEVTGANVLV AIFSEQESQA
VYLLRRSDIS RLDVVNYISH GFSKNEDSDA HQDHERIEDQ TEAGEERSML SQFASNLNQL
AKQGIIDPLI GRDQEIERAI QTLCRRRKNN PLLVGEAGVG KTAIAEGLAY RIVNNQVPEV
MSQATVYSLD LGSLLAGTKY RGDFEKRLKS LLKELSADKH AILFIDEIHT IIGAGAASGG
VMDASNLLKP LLSSGNLRCM GSTTFQEYQS IFEKDRALAR RFQKVDINEP SVAETTKILM
GLKAKYEEYH GVRYTQAAIN SAAELSAKHI NDRHLPDKAI DVIDEAGARM AMLPQSKRKK
TIGQAEIETI VAKIARIPEK SVSASDKDLL RNLERNLKMV VFGQDKAIES LSSAIRLSRS
GLGTDKKPVG SFLFAGPTGV GKTEVTNQLA SCLGMKLVRF DMSEYMESHT VSRLIGAPPG
YVGYDQGGLL TDAVIKNPHC VVLLDEIEKA HPDVYNLLLQ VMDHGTLTDN NGRKADFRHV
TLVMTTNAGV QETIRKSIGF TQQDHTQDAL SEINRVFSPE FRNRLDSIIW FNHLDMTIIA
KVVDKFLVEL QAQLDAKHVV LEVSDEARTL LAEKGYDKSM GARPMARVVT ELIKRPLADA
ILFGELEHGG IAHVDAKDGE IVIHTERHEK STTKA
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