| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1621 |
|---|
| Symbol | |
|---|
| ID | 4252197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 1917014 |
|---|
| End bp | 1917895 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638118233 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_733754 |
|---|
| Protein GI | 113969961 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.358841 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATAC GCCAACTTAA ACATTTAGAT GCACTGGCCA ATACTGGCAG TTTTACCGCC
GCGGCCAAGA AGCTCAATAT GGCGCAGCCG GCCCTAAGCC AAAGCATTAA ACGGCTCGAG
CAGTCGCTTG GGGTGACACT GATTAATCGC ACTAGTAATA AGAATGACAA GCACCTCGCG
CTCACCGCCG AAGGCTTAGT GCTGCATCAA CATGCCACTT TAATCCTAAA ACAAATCAAA
CAGGCCGAAG CGCAAATCCG CGCTATGGCG AATCTCACCT CAGGGGAAGT GCGGATAGCG
GTGCCAGGCA TGCTGGGCTC CTTCTATCTG CCCTCTCGAC TTATGGCCTT TCGCCATCAA
TATCCCGAGC TAAAGCTGTC ACTGTTTGAA GGCGGTACCC GTGACGCGCT ACGGATGTTA
CAGCAGGAAG AAGTGGATAT CGCCATCATT ACCGCCCAAG ATTTACAGAG TGACTTCGAT
AGCCAATTGT TGATCCGTGA GCAGATGGTG ATCGCCATGG GCGCCGAGCA TCCGCTCGCC
GATCATCCTG CCGTCAGCCT CAACGACTTC TTTGACCATG AATTAGTGAT GTTTAAAACT
GGCTATTTCC ACCGGGAATG GATCCTCTCC CAGGCCAAAG AATTGGGTAA AAAGCCCAAT
ATTGCCTTTG AGACTAACCT GATTAACTTA ATTAAACAGA TTGTCTCCCA GGGATTTGGG
ATCACTAGCG TGCTCGAAAT GGCCATCAGC CCAAAAGACG ACATTCTCGC CAAACCCTTT
GACCCACCGG TGTTTTTAAA TCTGCATATC GCGTGGAAAA AGCAGCGCCC CGTCAGCCAA
GCCGACCGCG CCTTTGTGGA ATTTTTAATG AAAAACCGCT AA
|
|---|
| Protein sequence | MDIRQLKHLD ALANTGSFTA AAKKLNMAQP ALSQSIKRLE QSLGVTLINR TSNKNDKHLA
LTAEGLVLHQ HATLILKQIK QAEAQIRAMA NLTSGEVRIA VPGMLGSFYL PSRLMAFRHQ
YPELKLSLFE GGTRDALRML QQEEVDIAII TAQDLQSDFD SQLLIREQMV IAMGAEHPLA
DHPAVSLNDF FDHELVMFKT GYFHREWILS QAKELGKKPN IAFETNLINL IKQIVSQGFG
ITSVLEMAIS PKDDILAKPF DPPVFLNLHI AWKKQRPVSQ ADRAFVEFLM KNR
|
|---|
| |