| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1605 |
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| Symbol | |
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| ID | 4252182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 1900193 |
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| End bp | 1900978 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638118218 |
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| Product | ribosomal large subunit pseudouridine synthase E |
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| Protein accession | YP_733739 |
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| Protein GI | 113969946 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0188099 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAA ACAGTACACC AGCAACAACA TCAAACACCC GCGCCCGCAG CCAACGCACT
TCATTTAAGC GCGACAATCA AGCTGATAGC CGCGCAAGCA ACAAGAAGAC CAATAACTTT
GCCAGAGCTG CCACGCCAGG TTTACAGCGG GGAGGTACTT CTGAGCGAAA CAGTTCTGAA
CGCGGAGGAG CTAAATCACG CCCGCAAAGG CATTCCTCAA CAACGCGTAC AAAACCCCAA
GGCGATCCGA TGATCGTCTT ATTTAATAAG CCGTTCGATG TCCTATGCCA ATTTACCGAT
GAGCAAGGCC GCAAGACCTT AAAGGATTAC ATCCCTATTC CTGGTGTGTA TGCCGCAGGG
CGATTGGATC GCGACAGTGA AGGCTTATTA CTCCTCACCA ACGATGGTCA ACTTCAGGCC
AAACTGACTG AGCCGAAAAA GAAAACCTTT AAAACCTATT GGGTGCAAGT CGAGGGAAAA
CCTACGGAAG CAGATTTGGC GAAACTGCGC CAAGGGGTTG AATTAAAAGA TGGTATGACA
CTCCCAGCGA AGGTCAGCAT CATGGCGACG CCGAATGTTT GGCCGCGTAA TCCGCCGATC
CGTGAGCGAA AAAACATCCC TACCACTTGG CTGGAAATTC AAATCCATGA AGGACGCAAT
CGCCAAGTTC GACGGATGAC GGCCCATATT GGTTTTCCGA CCTTAAGACT CATTCGTTAT
AAAATAGGTC AATGGAGTCT AGATGATTTA GCTACGGGTG AGCATAAATG CATCCAAATG
GCTTAG
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| Protein sequence | MNKNSTPATT SNTRARSQRT SFKRDNQADS RASNKKTNNF ARAATPGLQR GGTSERNSSE
RGGAKSRPQR HSSTTRTKPQ GDPMIVLFNK PFDVLCQFTD EQGRKTLKDY IPIPGVYAAG
RLDRDSEGLL LLTNDGQLQA KLTEPKKKTF KTYWVQVEGK PTEADLAKLR QGVELKDGMT
LPAKVSIMAT PNVWPRNPPI RERKNIPTTW LEIQIHEGRN RQVRRMTAHI GFPTLRLIRY
KIGQWSLDDL ATGEHKCIQM A
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