Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1603 |
Symbol | mnmA |
ID | 4252180 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1898292 |
End bp | 1899410 |
Gene Length | 1119 bp |
Protein Length | 372 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638118216 |
Product | tRNA-specific 2-thiouridylase MnmA |
Protein accession | YP_733737 |
Protein GI | 113969944 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000041777 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACATCAA TCGAACCCAC TCATACAGGA AAAAAAGTCA TTGTCGGCAT GTCCGGCGGT GTTGATTCAT CTGTTTCAGC CTATTTGCTA ATGCAGCAAG GCTATCAGGT TGAAGGCCTT TTCATGAAGA ACTGGGAAGA AGATGACAAC GACGAGTATT GCGCGGCCGC CGAAGATTTA AAAGATGCTC AAGCCGTTTG TGACAAACTT GGGATCAAAC TGCACACGGT CAACTTTGCC GCCGAATATT GGGACAATGT GTTCGAGTAC TTCCTCGCCG AATATAAGGC GGGTCGTACC CCTAACCCCG ATATCATGTG CAACAAAGAA ATCAAATTTA AAGCCTTTTT AGACTTTGCC GACGATATCC TCGATGCCGA CTATATCGCC ATGGGCCACT ATGTGCGCCG CCGCGATAAT GCCGATGGCA CCACGCAAAT GCTGCGCGGA GTTGATAACA ATAAGGATCA AAGCTACTTC CTGTATACCT TAAGCCATGA ACAAGTGGCG CGCAGCCTGT TCCCCGTTGG TGAACTCGAA AAGCACGAAG TGCGTGAAAT CGCTAAAAAA ATGGGCTTAA TTACCCATGA TAAAAAGGAC AGCACCGGCA TTTGCTTTAT CGGTGAACGC AAATTCACTG AATTCTTAGG CAATTACTTA CCTGCGCAAC CAGGCAATAT CGAAACCGCC GAAGGCGAAG TCATTGGCAA GCACCAAGGC TTGATGTACC ACACCTTAGG CCAACGTAAG GGTCTGGGTA TTGGCGGCAT GAAAAACAGC AATGACGACC CTTGGTACGT GGTCGATAAA GATCTCAAAC GTAATGTGCT TGTTGTTGGC CAAGGTGGGC ATCACCCGCG TTTGATGTCC AACGGCATGC TCGTCAATCA ATTGCATTGG GTCGACCGCA AAGGCCCCGC CGAAGGCAGC CAAATTGTGG TGAAAACCCG TTACCGCCAG CAGGATATCC CCTGCACCCT CACCTATCTT GATGATAATA CCCTCAAGGT GGTGTTTGAT GAGCCTGTTG CCGCCGTGAC CCCTGGCCAA TCAGCGGTAT TCTACGATGG CGAAGTGTGC CTAGGTGGCG GGATTATCGA TCAACTGATC CGAGGATAA
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Protein sequence | MTSIEPTHTG KKVIVGMSGG VDSSVSAYLL MQQGYQVEGL FMKNWEEDDN DEYCAAAEDL KDAQAVCDKL GIKLHTVNFA AEYWDNVFEY FLAEYKAGRT PNPDIMCNKE IKFKAFLDFA DDILDADYIA MGHYVRRRDN ADGTTQMLRG VDNNKDQSYF LYTLSHEQVA RSLFPVGELE KHEVREIAKK MGLITHDKKD STGICFIGER KFTEFLGNYL PAQPGNIETA EGEVIGKHQG LMYHTLGQRK GLGIGGMKNS NDDPWYVVDK DLKRNVLVVG QGGHHPRLMS NGMLVNQLHW VDRKGPAEGS QIVVKTRYRQ QDIPCTLTYL DDNTLKVVFD EPVAAVTPGQ SAVFYDGEVC LGGGIIDQLI RG
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