| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1585 |
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| Symbol | |
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| ID | 4252162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1873183 |
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| End bp | 1875867 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638118198 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_733719 |
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| Protein GI | 113969926 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.328544 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0409432 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCCAA TTTCCACCTT CTTGAGATTT TTTGGCGCAA ATCAAACTAT GGGTAAATCG
CTAGTTATTG TCGAATCACC GGCCAAAGCT AAGACCATTA ATAAATATCT TGGCAAAGAA
TTCATCGTTA AATCGAGCGT AGGTCACATC CGTGATCTAC CTACATCTTC TTCATCTGAC
GGCACTGAAA AGGTGAAATC CGCCGCAGAA GTCAAGAAGA TGTCGCCAGA AGAAAAGGCG
CGATACAAAA AGGTGAAAGA ACATCAAGCG CTGGTATCGC GTATGGGCGT TAACCCTGAA
AAGGGCTGGG CGGCTAAATA TCAAATCCTA CCGGGTAAAG AGAAAGTTGT TAAAGAGCTA
CAAGCTTTAG CCGATTCTGC TGACCAAATT TATCTCGCAA CGGACTTAGA CCGTGAAGGG
GAAGCCATTG CCTGGCACTT GCAAGAGGTG ATTGGTGGCG ACTCTTCACG GTATCAGCGC
GTGGTGTTTA ACGAGATAAC CAAATCTGCG ATTCAAGAAG CCTTTAGTAA ACCTTCAGCC
CTTGACACCA ATATGGTCAA TGCCCAACAG GCACGACGCT TTTTAGATCG CGTCGTCGGC
TTTATGGTAT CACCGCTGTT GTGGAAGAAG GTTGCCCGCG GTTTATCGGC TGGACGGGTG
CAATCTGTGG CTGTGCGCCT AGTGGTTGAA CGTGAAAGCG AAATCAAAGC CTTCGTCCCA
GAAGAATTTT GGGATGTGCA TGCTCAGCTG AATACGCCTG CCAGCGAAGC GCTGCGCATG
GAAGTGGTTA AGTACTTAGA CTCAGCCTTT GAGCCAACAA ATGAGCAGCA AGCATTAGCC
GCCGTTCAGG CCTTATCTTC AGCCAGCTTT AAAGTCATTG CCCGCGAAGA TAAAGCCACC
CAGAGTAAAC CTTCGGCTCC TTTTATTACC TCCACCTTGC AGCAAGCGGC CAGTACTCGC
TTAGGCTTTG GGGTGAAGAA AACCATGATG ATGGCGCAGC GTTTGTACGA AGCGGGTCAC
ATCACTTATA TGCGTACCGA CTCCACAAAC CTAAGCCAAG AAGCTTTAGA CAGTGTGCGT
GAGATGATTG GCAAGGAATA CGGCGCCAAG TATTTACCTG CCGAACCGAT TCGTTACGGC
TCTAAGGAAG GTGCACAAGA GGCGCACGAA GCGATTCGTC CTTCAAATGT GAACGTCGAA
GCCGCAGCTT TAACTGATAT GGAACGTGAT GCGCAGCGCC TTTACGAGCT TATTTGGCGT
CAGTTTGTCT CTTGTCAGAT GACACCTGCT CAATACGATG CGACTAAACT CACGGTAAAC
GCGGGCGATT ACGAACTGAA AGCGACTGGA CGTATCCTGC GTTTTGACGG TTGGACCCGT
GTTCAAACAG CGCTGAAAAA GAAAAACGAA GAAGACAACA CACTGCCCTC GGTGAACGAA
GGTGATCTGT TGTCTCTGGT CGAATTAGAG CCCAAACAGC ACTTTACCAA GCCGCCCGCC
AGATACAGCG AAGCGTCATT GGTGAAAGAG TTAGAGAAGC GTGGCATTGG CCGGCCATCA
ACCTATGCCA CCATTATTTC GACGATTCAA GAACGGGGTT ATGTCAAAGT TGAAAACCGC
CGTTTCTATG CCGAGAAAAT GGGTGAAATC GTTAGCGAAC GCCTCGTCGG TAGTTTTGCC
GAGCTGATGA GCTATGATTT TACCGCCAGC ATGGAACAGA CTCTCGATGA TGTTGCCAAA
GGTGAACTGG ATTGGAAAAA AGTCCTCGAT GGCTTCTATG CCGACTTCAC TAAGCAATTA
GAGAAGGCTG AGTTAGCACC GGAAGAGGGC GGTATGCGCC TCAATCAAAT GGTGATGACT
AATATCAAGT GTCCGACTTG CGGCCGTTCA ATGGGGATCC GGACTGGCAC AACAGGGGTA
TTCCTTGGTT GTTCGGGCTA CGAGTTGCCA CCAAAAGAAC GCTGCAAAAC TACCATGAAC
TTAACGCCAG GCATTGAAGC GATAAGCGAC AGTGAGGATG CCGAGACCGA TGCACTGCGT
GCCAAGCACC GCTGTGGTAT TTGCGGCACG GCGATGGACA GTTATCTTAT CGACGAAAAA
CGCAAACTGC ATGTTTGTGG TAATAACCCT GTTTGTGAGG GCTATGAGGT CGAAGAAGGG
CAATTTAAGA TCAAAGGTTA CGAAGGTCCA TTAATCGAAT GTGACCGTTG CGGCCATGAT
ATGGAACTGA AAAACGGTCG TTTTGGTAAG TATTTCGGTT GTACTAATTC GGAATGTAAG
AATACTCGTA AGTTACTGAA AAACGGTGAA GCGGCACCAC CAAAAGAAGA TCCTATCTAT
CTGCCAGAGC TGAAATGCAG CAAGTCTGAT GCGCATTTTG TGCTACGTGA TGGCGCGGCA
GGGATTTTTT TAGCGGCCAG TACTTTCCCT AAATCACGGG AAACCCGCGC ACCACTGGTT
GAAGAGTTAG TGAAATACCG TGAACTGTTA TGGCCTAAGT ATCAGTATCT TGCCGATGCA
CCTATCGCCG ATGATGAGGG CAACAAAGCG GCGGTTAAGT TTAGCCGTAA GACCAAAGAG
CAATACGTGG CGACCGAAGT TGGCGGTAAA GCAACCGGGT GGTCGGCTCA TTATGTGAAT
GGTAAATGGG TGACAGAATC GACGGCGAAG AAAGCCAAGA AATAG
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| Protein sequence | MEPISTFLRF FGANQTMGKS LVIVESPAKA KTINKYLGKE FIVKSSVGHI RDLPTSSSSD
GTEKVKSAAE VKKMSPEEKA RYKKVKEHQA LVSRMGVNPE KGWAAKYQIL PGKEKVVKEL
QALADSADQI YLATDLDREG EAIAWHLQEV IGGDSSRYQR VVFNEITKSA IQEAFSKPSA
LDTNMVNAQQ ARRFLDRVVG FMVSPLLWKK VARGLSAGRV QSVAVRLVVE RESEIKAFVP
EEFWDVHAQL NTPASEALRM EVVKYLDSAF EPTNEQQALA AVQALSSASF KVIAREDKAT
QSKPSAPFIT STLQQAASTR LGFGVKKTMM MAQRLYEAGH ITYMRTDSTN LSQEALDSVR
EMIGKEYGAK YLPAEPIRYG SKEGAQEAHE AIRPSNVNVE AAALTDMERD AQRLYELIWR
QFVSCQMTPA QYDATKLTVN AGDYELKATG RILRFDGWTR VQTALKKKNE EDNTLPSVNE
GDLLSLVELE PKQHFTKPPA RYSEASLVKE LEKRGIGRPS TYATIISTIQ ERGYVKVENR
RFYAEKMGEI VSERLVGSFA ELMSYDFTAS MEQTLDDVAK GELDWKKVLD GFYADFTKQL
EKAELAPEEG GMRLNQMVMT NIKCPTCGRS MGIRTGTTGV FLGCSGYELP PKERCKTTMN
LTPGIEAISD SEDAETDALR AKHRCGICGT AMDSYLIDEK RKLHVCGNNP VCEGYEVEEG
QFKIKGYEGP LIECDRCGHD MELKNGRFGK YFGCTNSECK NTRKLLKNGE AAPPKEDPIY
LPELKCSKSD AHFVLRDGAA GIFLAASTFP KSRETRAPLV EELVKYRELL WPKYQYLADA
PIADDEGNKA AVKFSRKTKE QYVATEVGGK ATGWSAHYVN GKWVTESTAK KAKK
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