| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1508 |
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| Symbol | |
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| ID | 4252086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1773763 |
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| End bp | 1775835 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638118107 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_733643 |
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| Protein GI | 113969850 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000647513 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000119836 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATATGC AAGACATTCA ACTCGATAAA CGCCTATCTG AACTGCTTTC TCAAGCTGTC
ACGCCACACA ATGCTCAGCC ATTGATGCAG GCGCTCTGCC AATCTCTGAA TGAACACAAT
ATTCGTTACT ATGTTGATGA TGCGCCAAGC ATTACCGACT CCGAATACGA CAGATTAATG
CAGCGTCTGA AACAGCTTGA GGCCGAGTAT CCTCAGTTTG TTGCTGCCGA CTCACCCACC
CAAAGAGTGG GCGGCATGGC GCTGGCAAAG TTTGAACAAA TCACTCATCT TAAGCCTATG
TTAAGTCTCG ATAATGCCTT CGATGAGGCA GACTTTAGCG CGTTTCATAA ACGTGTCAGC
GACAGAGTTG GCGAAGTGAG TTTTTGTTGT GAGCCTAAGC TCGATGGTCT AGCTGTGAGT
ATTTTGTATC GCAATGGTGT GCTTGAGCGC GCCGCGACCC GGGGTGATGG TACCGTGGGT
GAGGATATTA CTGAAAACGT TAAAACCATT AAGTCGATTC CGCTCAAACT GCGCGGTGAC
AACTATCCCG AATTGGTCGA AGTGCGCGGC GAAGCCTTTA TGCCCAAGGC GGCGTTTGAG
GCACTAAATG AGCGTGCACG CTTAAAGGAT GAAAAGCTGT TCGTCAATCC GCGTAATGCG
GCGGCGGGCA GCTTACGTCA GCTCGACAGT AAAATTACCG CGTCACGGGC GCTGTCTTTT
TATGCCTACG CCTTAGGTGT GGTGGAGCCG ACTTCCCATG AGCTAGCTAA GACGCATTAT
GAGCAATTGC AGCAACTTAA ATCTTGGGGG CTACCAGTCA GTAGCGAGAT CAAAGTCTGT
GACGAACTCA GCCAAGTATT TGCCTACTAT CAAGATATAT TGACTCGCCG CAGCTATTTA
CCCTTTGAGA TCGATGGCGT GGTGATGAAG GTGAACGATA TCGCCCAGCA GCAAACCTTA
GGGTTTGTGG CTAAATCACC CCGTTGGGCG ATTGCCTATA AGTTCCCCGC TCAGGAAGAA
ATGACCCTGC TCGAAGGCGT AGATTTTCAA GTGGGCCGCA CTGGCGCGGT GACTCCAGTC
GCGCGCCTAA AACCTGTGTT TGTCGGCGGC GTGACCGTAT CGAACGCGAC TTTGCACAAT
GCCGATGAAA TCGAGCGTTT AGGTGTGATG GTGGGCGATA CTGTGATTAT CCGCCGTGCC
GGCGATGTGA TCCCGCAAAT TGTGGCCATA GTGCCTGAGC GTCGCCCAGA AGATGCGAAG
GCGATTGCCT TCCCGCAACA TTGCCCCGTT TGCGGTAGTT TGGTTGAGCG ATTAGAAGGT
GAGGCCGTGA CCCGTTGTAG CGGCGGCTTA TTCTGTGAGG CCCAGCGTAA AGAGGCGATC
AAGCATTTTG CCTCCCGCAA GGCATTAGAT ATCGACGGCA TGGGCGATAA AATTGTCGAG
CAGTTGATTG ATAAGGAGCT GGTGCAAAGC CCGGCTGACT TATTTAAACT CCCCGCCTCT
ATGATGACCA TGCTCGACCG TATGGGAATG AAGTCGGCCA CCAATCTCGC GCAGGCGATT
GAAGCGGCTA AAACCACGAC TTTGCCTCGT TTCCTCTATG CCTTAGGCAT TCGTGAGGTG
GGGGAGGCCA CGGCGTCGAA CCTTGCGACT CACTTTGGTA GCCTAGAGGC ACTGCGCGTG
GCCACCATTG AGCAACTTAT TCAAGTTGAA GATATTGGTG AAGTGGTTGC CCAGCACGTG
GCGCATTTCT TTGCCCAGCC CCATAACCTA GAGGTGATCG ATGCTTTGAT TGCGGCGGGC
GTCAACTGGC CTACGATTGC AGCGCCAAGC GCCGATGAGC AGCCGTTGAA GGGGCAGACT
TGGGTGTTAA CAGGGACCTT AAATCAACTC AACCGTAACG ATGCTAAGGC GCAGTTACAG
GCCTTAGGCG CCAAAGTAGC GGGCAGTGTG TCGAAAAATA CCGATTGCTT AGTCGCGGGC
GAAGCGGCGG GGTCTAAGCT TGCCAAAGCG CAGGAGCTTG GCGTGAAAGT GATTGGCGAG
GATGAATTGT TGGCCTTACT GGCAAATAGC TAA
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| Protein sequence | MNMQDIQLDK RLSELLSQAV TPHNAQPLMQ ALCQSLNEHN IRYYVDDAPS ITDSEYDRLM
QRLKQLEAEY PQFVAADSPT QRVGGMALAK FEQITHLKPM LSLDNAFDEA DFSAFHKRVS
DRVGEVSFCC EPKLDGLAVS ILYRNGVLER AATRGDGTVG EDITENVKTI KSIPLKLRGD
NYPELVEVRG EAFMPKAAFE ALNERARLKD EKLFVNPRNA AAGSLRQLDS KITASRALSF
YAYALGVVEP TSHELAKTHY EQLQQLKSWG LPVSSEIKVC DELSQVFAYY QDILTRRSYL
PFEIDGVVMK VNDIAQQQTL GFVAKSPRWA IAYKFPAQEE MTLLEGVDFQ VGRTGAVTPV
ARLKPVFVGG VTVSNATLHN ADEIERLGVM VGDTVIIRRA GDVIPQIVAI VPERRPEDAK
AIAFPQHCPV CGSLVERLEG EAVTRCSGGL FCEAQRKEAI KHFASRKALD IDGMGDKIVE
QLIDKELVQS PADLFKLPAS MMTMLDRMGM KSATNLAQAI EAAKTTTLPR FLYALGIREV
GEATASNLAT HFGSLEALRV ATIEQLIQVE DIGEVVAQHV AHFFAQPHNL EVIDALIAAG
VNWPTIAAPS ADEQPLKGQT WVLTGTLNQL NRNDAKAQLQ ALGAKVAGSV SKNTDCLVAG
EAAGSKLAKA QELGVKVIGE DELLALLANS
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