Gene Shewmr4_1502 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1502 
Symbol 
ID4252080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1763823 
End bp1764944 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content49% 
IMG OID638118101 
Product3-oxoacyl-(acyl carrier protein) synthase III 
Protein accessionYP_733637 
Protein GI113969844 
COG category[I] Lipid transport and metabolism 
COG ID[COG0332] 3-oxoacyl-[acyl-carrier-protein] synthase III 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.259423 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000378391 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACAGG TCGTTATTTC TGGCAGCGGT TTATTTACGC CGCCACACAG TATTTCAAAT 
GAAGCTTTGG TGGAGAGCTT CAACGCCTAT GTAGATATGT TTAACCTTGA AAATGCAGGA
TTAATTGAGC AGGGCCATGT CGAGCCGCTG TCTTATTCCT CCAGTGAGTT TATCCAGAAG
GCCTCGGGCA TCAAGCACAG ATATGTGATG GTTAAAGACG GTATTCTCGA TCCTGAAATC
ATGATGCCGC TTATTCCTGA GCGCAGCAGT GACGAGTTAT CTATGCAGGC CGAAATTGGG
GTTGAGGCGG CAGTGATGGC GCTTAAACAA GCGGATGTGA AGGCCGAGAA AATCGATTTA
GTGATCGTTT CCTGTGCTTA TACACAGCGC GCGTATCCTG CGATGGCGAT TGAAATCCAG
CGGGCACTGG GGACTCGTGG CTATGGTTAC GATATGCAGG TTGCCTGTTC TTCAGCCACC
TTTGCCATTG TGGCCGCCGC CAATGCGATT GCAACGGGCT CGGCTTCACG GGTGTTAGTG
ATTAACCCCG AAATTTGTTC GGCGCAGGTG AACTACCGTG ACCGTGACAG TCACTTTATC
TTCGGGGATG TGGCGACCGC TATGGTGCTT GAAGAGCAAA GCCTAGTGGC CGCCAATAAA
GGCTTCAACA TTGTTTCAAG TCGTTGTTTT ACAGACTACT CGAACAATAT TCGCAGTAAT
TTCGGTTTTT TAAATCGCTG CGATCCAAGC TCGGCGCATC AGGCGGATAA GTTATTCCAC
CAACAGGGTC GCAAAGTCTT TAAAGAACTG TTGCCGATGA TCTACCAACA TTTAGACGAG
CATTTGGCCG AGCAATCCCT TACGCCACAG TCCTTTAAAC GTTTGTGGTT GCATCAAGCC
AACATCAACA TGAACCAATT TGTGGTGAAA AAACTGCTAG GGGATGAGGT AACGCCTGAG
CAAGCCCCCG TGGTGCTCGA CGAGTATGCC AATACCGCCT CCGCTGGCTC AGTGATTGCC
TTCCATAAAT ATTCCGCTGA CTTTAATGCG GGCGATTTAG GGCTATTAAG CTCCTTTGGC
GCGGGTTACT CCATCGGTAG CGTGATCCTG CAAAAACGCT AA
 
Protein sequence
MKQVVISGSG LFTPPHSISN EALVESFNAY VDMFNLENAG LIEQGHVEPL SYSSSEFIQK 
ASGIKHRYVM VKDGILDPEI MMPLIPERSS DELSMQAEIG VEAAVMALKQ ADVKAEKIDL
VIVSCAYTQR AYPAMAIEIQ RALGTRGYGY DMQVACSSAT FAIVAAANAI ATGSASRVLV
INPEICSAQV NYRDRDSHFI FGDVATAMVL EEQSLVAANK GFNIVSSRCF TDYSNNIRSN
FGFLNRCDPS SAHQADKLFH QQGRKVFKEL LPMIYQHLDE HLAEQSLTPQ SFKRLWLHQA
NINMNQFVVK KLLGDEVTPE QAPVVLDEYA NTASAGSVIA FHKYSADFNA GDLGLLSSFG
AGYSIGSVIL QKR