Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1497 |
Symbol | |
ID | 4252075 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1755543 |
End bp | 1758194 |
Gene Length | 2652 bp |
Protein Length | 883 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638118096 |
Product | TonB-dependent receptor |
Protein accession | YP_733632 |
Protein GI | 113969839 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0195918 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGCTA ATTCGACATT AGCCAAAGCG GTTCGCTTTG CGTTAATTGG TGGTGCCACA ACAGCGGCTT TATCTAGCAC TGCTGTTTAT GCGGCAGAGG AGAATGCTAA GGTAGAACGT ATTGAAGTAA CGGGATCTCG TATTCAAAGA ACGGATATGG AATCTGCTTT ACCTGTTACT GTTTTATCAG CAGAAGATAT TGCCAAAACA GGTTTAAGTG ATGTTTCTGC TGTTTTAGCA CAAATGCCAT TTAACACTGC TGGTAGTTTT ATTAGTGATG CAGGTAGCTC TGCAAGTAAC CACGCCAGTT CTGGTATGCG TGGTTTAGGT TCAAACCGCA CGTTAACCTT GATCAACGGT CGCCGTATTG CGCCATCTGC AACCTTTGGT GGCGATTCAA CGAACCTCAA CTTAATCCCT ATGGATGCAA TCGAGCGTAT TGAAATTTTA CGTGACGGTG CATCGGCAAT TTACGGTTCG GATGCTATCG GTGGTGTAAT TAACATCATC CTAAAGAAAA CGTTCGATGG TTTAGCATTC GACGCAAAAT TTGGTAGTCC AACTCAAGGT GGTAGAGATG AGAAATCAGC TTCTGTCACT TTCGGTAATA CTAGCGATAA AAGCAACAGC TTAGTGATCA TCGAGCACAA GCAATTTGAT CCACTACAAG GTGGCCAACG TCCTCACTTA ACGGCTAACT GGGATAAGAA ATACGGTCGT AGCGGCTTGT ATGCGCCAGA AGGTACATAT CGTCCAGTTG AATCTCGCCC TGTTAAAGGT GCTGATGGTA CTTTCGGCAC TCCTGTTTAT ACAGGTTTGC AAGTTCCAGG TAAGGACTGC CCTGCAGATC GTATTGTTAC CAGCAAAGAC GGTTCAGCTT GTGGTTTTAA CCAGTTTGAT GGCACAGACT ATTTACCCGA TCAGACAAAA GACTCTGTAT TCTCTAATAT GACTTACCGT ATTACCGATG AATTAGAGTG GTTTGGTCAA GCTATCGTTA TGCGAGACAA ATCCAGTACT TCTTCAACTG CGCTATGGAC TCCTAACTTA TACATGGCGG CAGATAATCC ATTAAACCCA ACATTCGGTA CCGCTAATGC ATCAGAAGTG CAAGCCTATC ACCGTTTGAA AGGTGTAGCA GACCGTAAAA CAGAATTCGA CTCAAACGTA GTTGATATCG TAACGGGTCT AAACCTTGAA TTAGATGCAG GCTCTTTGAG CTGGTACGTA CAATACTCAG ATCAAATCGT AAACATTGAA ACTGACTCTT ATGTATTCGA AGATAAGTTA CAAGAAGCGG TAGATAAAGG CTTGTACAAC CCATTCGTTG AGGGTGGTAA TGCGACCCAA GAGACTTTAG ATACTTTCCT ACACACAGCC ACTCGTAAAG CAACCTCAAA TACGACTGGT ACTGGATTAT CTTGGGCAGC CCTTGCTCCA ATTTCATTGC CTGGTGGTGA CTTAGGTTAC GCAGTAGGTA TGGAATACCA AAAAATCGAA TACAAAGATA CCCGTGATGC TCAACAAGCC GCAGGTAACG TATTAGGAAC TTATGGTGGT GATTCTGCTG GTGACAGAAG CTATAAAGCG GCATTCGTTG AGTTGGAACT GCCAGTATTA GATCACTTAA ACGTGAAACT AGCGAGCCGT TACGACCAAT ATAGCTTGCC CGATGTTGGC CAGCTTTCAA GCTCTGTAAA CGTACGTTAC GAAGCATTGG ACAACTTAGT GTTACGTGCA TCTTACGGCC AAGGCTTTAG AGCACCTTCA CTGGATGACC TGTTAGGCAA GCCAGCAACC AGTTATGACA GAATCACTGA CACAACCCTG TGTCAAAGTC TGCCAGATGA CCAAAAAGAC GGCAACCCAG CTTGTGAAGA TAACCAATAC CTACGTAAGA GTTCAGGTAA CAAAGAGCTA GATCCAGAGA AATCTGCTCA GTACTCTTTC GGTGCCGTAT GGAATATCAC TGAAAACATC GACTTAGTTG TTGATTACTA CAACATCGAA ATCACAGACC AAGTCAGCTA CATCGATGCA CAAACAATCG TTGACTTAGA AGCGATTGGT GGCTTAGGTG CTTATGACCC TAACTACATC TACGTCAAAC GTAAAGATGA CGGCACCATC GATGAAATTG GCGCTGGCAA CATCAACATG GATGGCGTGC AAACATCAGG TCTTGACGTG TCATTCACAT CAAACTTCGA TTTTGCTGAA TTTGGTGCAT TTAAGTTTGC GGTTGAAGGA ACCTATGCTC TTGAATACAC AGAGCAAGCA AGCCCGATAG CTAAACGTTA TGACGTATTA GGTACTAAGG GTTATCCACC ACTACGTTTC AACACAACAT TTAGCTACGC CATTGATGAC TTCTCAGCAT CTTTGATTGC TAAGTACATT GATTCTTATG ATGGTGAAAC TCCACAACAA CAAGAAGTTG GCACAAATAA ACAAGACTTC TCATCGTTCA CAACGTGGGA TCTGACATTG AACTACGACT TCGACAGCTA TGGCAAAGTC ACAGTAGGTG CTCGTAACTT GTTCGATGCA ATGCCAACAG TTAACTACAG CTTAGGCTAC CCTGGATACG ATACTGACAC CCATAACATC GTGGGCCGTG TAGTGTTTGC AGGATACAAA GTGAAATTCT AA
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Protein sequence | MRANSTLAKA VRFALIGGAT TAALSSTAVY AAEENAKVER IEVTGSRIQR TDMESALPVT VLSAEDIAKT GLSDVSAVLA QMPFNTAGSF ISDAGSSASN HASSGMRGLG SNRTLTLING RRIAPSATFG GDSTNLNLIP MDAIERIEIL RDGASAIYGS DAIGGVINII LKKTFDGLAF DAKFGSPTQG GRDEKSASVT FGNTSDKSNS LVIIEHKQFD PLQGGQRPHL TANWDKKYGR SGLYAPEGTY RPVESRPVKG ADGTFGTPVY TGLQVPGKDC PADRIVTSKD GSACGFNQFD GTDYLPDQTK DSVFSNMTYR ITDELEWFGQ AIVMRDKSST SSTALWTPNL YMAADNPLNP TFGTANASEV QAYHRLKGVA DRKTEFDSNV VDIVTGLNLE LDAGSLSWYV QYSDQIVNIE TDSYVFEDKL QEAVDKGLYN PFVEGGNATQ ETLDTFLHTA TRKATSNTTG TGLSWAALAP ISLPGGDLGY AVGMEYQKIE YKDTRDAQQA AGNVLGTYGG DSAGDRSYKA AFVELELPVL DHLNVKLASR YDQYSLPDVG QLSSSVNVRY EALDNLVLRA SYGQGFRAPS LDDLLGKPAT SYDRITDTTL CQSLPDDQKD GNPACEDNQY LRKSSGNKEL DPEKSAQYSF GAVWNITENI DLVVDYYNIE ITDQVSYIDA QTIVDLEAIG GLGAYDPNYI YVKRKDDGTI DEIGAGNINM DGVQTSGLDV SFTSNFDFAE FGAFKFAVEG TYALEYTEQA SPIAKRYDVL GTKGYPPLRF NTTFSYAIDD FSASLIAKYI DSYDGETPQQ QEVGTNKQDF SSFTTWDLTL NYDFDSYGKV TVGARNLFDA MPTVNYSLGY PGYDTDTHNI VGRVVFAGYK VKF
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