Gene Shewmr4_1485 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1485 
Symbol 
ID4252063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1740611 
End bp1741717 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content50% 
IMG OID638118084 
Producthypothetical protein 
Protein accessionYP_733620 
Protein GI113969827 
COG category[R] General function prediction only 
COG ID[COG0628] Predicted permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00467252 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACGTT CCAATACGCC GTCTGCCGCC TATAAAGGTT TTGCCGTCAT GGCCTTTGTG 
GTGATTATTT TGGCAGGGAT AAAGGCCGCC AGCCCGATTG TTGTTCCCTT TGTGTTATCC
AGTTTTATTG CGGTGATCTG TAATCCGGCG ATAGGCTTGA TGACCAAATA TCGCGTACCT
AAATGGCTCG CCGTGATCCT GCTGATGGGT TTTATCGTGT TGATGGGCTT GTGGCTCGCC
TCTCTGGTAG GCAGCTCCAT TAATGAGTTT TCTAAGCAGT TGCCGCAGTA TCGCGATCAG
CTGGTGGAGC AGTTTTCTTG GGTGCTGCAT AAGTTGCAGG CGCTGAATAT CCAAATCTCC
AAGGAACAAG TGTTGGCCTA TTTCGATCCC GGCATGGCGT TGTCTATGAC CACCAATATG
CTCTCGGGTG TTGGCAATGT GATGGCGAAT TTGTTCCTGA TCATTCTGAC CATCGTCTTT
ATGCTGTTTG AGGCGCAATC TTTGCCGAAG AAACTGCACT TGGCACTGGA CGATCCGGAC
ATGCGTTTGC AGCAGATTGA CCGTTTTCTG CAATCGGTGA ATCAATATAT GGTGATTAAG
ACCTTAGTCA GTTTAGCGAC GGGCTTGATT GTCGGCGTGG GGCTTGCGGT GATTGGGGTG
GATTACGCGC TGCTTTGGGC GGTTATCGCC TTTTTATTCA ACTATATCCC GAATATCGGC
TCGATTATCG CGGCCATTCC CGCCGTGTTG CTGGCCTTTA TCCAATTAGG CCCTGCGGCG
GCTGGCGGTA CGGCGATGTT ATACGTCGGC GCAAATATGG TGATGGGCAA TGTGGTTGAG
CCTAAGTTTA TGGGCCGCGG TCTCGGGCTT TCCACCCTAG TGGTGTTCTT ATCGTTAATT
TTTTGGGGGT GGTTACTGGG CTCGGTCGGC ATGTTGCTGT CGGTTCCCTT AACCATGGTC
GTCAAGATCG CCCTCGAATC CAGTAAGAGT GGTGGCTGGT TAGCCATTTT ATTATCCGAC
GATGTGGATG ATAAACTAGT AAGCCAATCG ACAAGCACCG CTCCGATTTC TGAACCTGTC
GATACCCATT CAACAGATAA TAAGTAG
 
Protein sequence
MTRSNTPSAA YKGFAVMAFV VIILAGIKAA SPIVVPFVLS SFIAVICNPA IGLMTKYRVP 
KWLAVILLMG FIVLMGLWLA SLVGSSINEF SKQLPQYRDQ LVEQFSWVLH KLQALNIQIS
KEQVLAYFDP GMALSMTTNM LSGVGNVMAN LFLIILTIVF MLFEAQSLPK KLHLALDDPD
MRLQQIDRFL QSVNQYMVIK TLVSLATGLI VGVGLAVIGV DYALLWAVIA FLFNYIPNIG
SIIAAIPAVL LAFIQLGPAA AGGTAMLYVG ANMVMGNVVE PKFMGRGLGL STLVVFLSLI
FWGWLLGSVG MLLSVPLTMV VKIALESSKS GGWLAILLSD DVDDKLVSQS TSTAPISEPV
DTHSTDNK