Gene Shewmr4_1480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1480 
Symbol 
ID4252058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1733803 
End bp1736304 
Gene Length2502 bp 
Protein Length833 aa 
Translation table11 
GC content53% 
IMG OID638118079 
Producthypothetical protein 
Protein accessionYP_733615 
Protein GI113969822 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCTTA ATTTGGCATG GCGCCTGTTT AAGCGCGAGC TGCAACAGGG GCAGTTGTTA 
TTGATAATCC TCGCCATTAC CTTGGCGGTG CTGTCGGTCA GTGGTCTTGC GCGGGTCAGT
GAGCGTTTGC AGGTCGCGAT AAACGGGCAA GCGACTCAGT TTATCGCCGC CGATCGCATC
ATCGACTCTC CCGTTCAAAT TGATGCCAGC ATTCTGGCTA AGGCCGACGA GCTTGGTCTT
AAGCATGTGA CCAATATGCA ATTTAACTCT ATGGTGTATG CGGGGGATAA GTTTCAGTTA
GTCACAGTGC GGGCGGTCGA GTCTGGTTAT CCACTTAAGG GCGACATAGA ACTTAAAGCG
GCCAATGGCC AAGATGAAAA AGCCCAAGGC TTGCCCCACG CCGATGAGGT GTGGTTTGAG
AGTCGCTTAG GGGGACTCTT GGGATACCCG CAAACACTGG AGTTAGGCAA CAGTGAGTTT
CGTTTAAGTC AAGAAATCAG CCGCTTACCC GATGCGGGTT TTAATCCATT CGCTTCTTCC
CCCGTGGTGT TAATGCGGAT TGAAGATGTC GCCAAGACTG GGGTTATTCA ACCCGGCAGC
CGAGTGACCT ATCTGTATCA ATTTGTGGGT GAAGAAAGCG CCTTCAGCGC CTTTGAAAAT
AGCGTTAAAC CGCTGCTGAA TAATTCCCAG CGCTGGGTCG ATGTGCAGTC TGGCGACTCA
CCGATAGCGG GCGCGGTGAA GCGGGCGGAG CGTTTTTTAC TGCTGGCAAG TTTGCTCGGT
ATTGCGCTGG CCTGCGCCGC GATTGGGATT GCTGCCCAGC GTTACTGCCA ACGTCATTAT
GATGTGGTCG CCATGCTCAA AACCTTTGGC GCCTCATCAA CTCAAATCCG TCGACTATTC
GGCATCCATT TACTGCTGGT GACGCTGTTT GGCATTGTGC TGGGGTTAAT CGGCGGGGCA
CTGCTGGATT TAGGCATTAA TCAACTATTA CCCCCTGAAA TCGCTGCTTA TTCGCCGCCG
TTGACTCGGC CGCTACTGCT TGGGATCAGC ACAGGGCTTA TCAGCGCCTT TATGTTTTCG
GCCTATCCTT TAATGCGTCT GCTGGCCATT CCGCCACTGC GCGTTTTACA AAGGCAACTC
GAGGGCTTGC AGCTCGGCAT GTGGCTGCAT TTACTCCTCA GTTTAGGGGC GATGGCACTT
TTGGGATATT TGTATTCCCA AAGCTGGGCA CTGACACTGA CGGTGGTCGC GGCTGTGCTG
CTACTGGGCG TATTGCTCAG TATTTTAGGC TTTGTGATGA TCCGCCTTGG TCACAGTGTC
GGCATGAAAA CCACCAATCC CTTGCAACTG GCTCTCGCGG GGTTACGCCG CCGCGCGCGG
CAAAATGCGG TGCAATTGGT GGGCTTTAGT GCGGCCTTGG TATTGCTATT GACCATTTTG
GCCCTGAGGC AAGATTTACT GAACGAGTGG CAAAAACAGC TGCCCGAGAA TGCGCCCAAC
TATTTCTTGG TCAATATCGC CCCCGATGAT GCTAAGCCAT TAAATGACTT TATGGCGCAA
AAGGGCATAG CTGCAACGGA TATCTATCCC GTGATTCGCG GCCGCTTGAC TCAAATCAAT
GGTGAAACCT TGATTTCCGA CGAGCAGGCC GAAGCGGGAG AGAAGGGGCG AGTAGGGATT
TCCCGCGAGC TTAATCTCAC CTGGCGCAAT AGCTTACCCG CCAACAATGA GTTAGTTGAA
GGGCATTTTA ATCAGGCGGC GGATGAGGTT TCTGTCGAGT CAGGTGTTGC CGATCGTTTA
GGACTAAAGC TAGGCGATAC GCTGACTTAC ATGATTGATA ACCAAGAGCT TAGGGTCAAG
GTCGCTAGTA TCCGTGCCGT GCACTGGGAA ACCATGCAAC CAAACTTCTT TATGATCTTC
ACTCAAGAAG CGCTGGCGCC CTTTGCCTAT ACCTCGATGG CAAGCTTCTA CCTCGACGAT
AAAAAAACGG ATGTACAAGG GAGTGATGCT CCGAAGAGCA CAGTGATCCT CGAACTTATC
CAGCAGTTCC CAACGGTGTC GATTATCGAT GTCGGCGCCA TGGTGGGGCA ATTGCGGCAG
ATTATTGAGC AGGTGTCCCT GTCGCTGACG TTGGTCTTGG TTCTCGTTTT ACTGGCCAGT
TCTTTAGTGC TTATTGCGCA AACCGAGGCG GGAATGGCGA CACGCCAGCG TGAACTCGCA
GTGCTGCGCA CCTTTGGCGC CTCAGGCTGG TTACTGCGTA GCGCCACTGG GCTTGAATTT
GCGTTACTGG GGGGCATAGC TGGGGTACTT GCAGTGATAG TGGCCGAATT TGCGCTGTAT
CTGTTAAAGA CCCAAGTGTT TGAACTCAAT GTGTATATGC ACTGGCCCTG GTGGGGGATT
GCCCCTGTCT GCGGTGCCTT GTTAGTTGCA TTACTGGGTG TTTGGCGCTG CCGTCAATTG
CTCAATCAAT CCTGCGCCGA ATTATTAAAA GCGGGCGCTT AA
 
Protein sequence
MELNLAWRLF KRELQQGQLL LIILAITLAV LSVSGLARVS ERLQVAINGQ ATQFIAADRI 
IDSPVQIDAS ILAKADELGL KHVTNMQFNS MVYAGDKFQL VTVRAVESGY PLKGDIELKA
ANGQDEKAQG LPHADEVWFE SRLGGLLGYP QTLELGNSEF RLSQEISRLP DAGFNPFASS
PVVLMRIEDV AKTGVIQPGS RVTYLYQFVG EESAFSAFEN SVKPLLNNSQ RWVDVQSGDS
PIAGAVKRAE RFLLLASLLG IALACAAIGI AAQRYCQRHY DVVAMLKTFG ASSTQIRRLF
GIHLLLVTLF GIVLGLIGGA LLDLGINQLL PPEIAAYSPP LTRPLLLGIS TGLISAFMFS
AYPLMRLLAI PPLRVLQRQL EGLQLGMWLH LLLSLGAMAL LGYLYSQSWA LTLTVVAAVL
LLGVLLSILG FVMIRLGHSV GMKTTNPLQL ALAGLRRRAR QNAVQLVGFS AALVLLLTIL
ALRQDLLNEW QKQLPENAPN YFLVNIAPDD AKPLNDFMAQ KGIAATDIYP VIRGRLTQIN
GETLISDEQA EAGEKGRVGI SRELNLTWRN SLPANNELVE GHFNQAADEV SVESGVADRL
GLKLGDTLTY MIDNQELRVK VASIRAVHWE TMQPNFFMIF TQEALAPFAY TSMASFYLDD
KKTDVQGSDA PKSTVILELI QQFPTVSIID VGAMVGQLRQ IIEQVSLSLT LVLVLVLLAS
SLVLIAQTEA GMATRQRELA VLRTFGASGW LLRSATGLEF ALLGGIAGVL AVIVAEFALY
LLKTQVFELN VYMHWPWWGI APVCGALLVA LLGVWRCRQL LNQSCAELLK AGA