| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1468 |
|---|
| Symbol | |
|---|
| ID | 4252046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 1716554 |
|---|
| End bp | 1717291 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638118067 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_733603 |
|---|
| Protein GI | 113969810 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0118421 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGGAAT ATCAAGCAGC AAAAGATTTA CTCAAAGGTA AAACCATACT GGTGACAGGC
GCTGGCGCAG GTATCGGTCG CGCGGCGGCC ATTGAATTTG CCAAACACGG TGCCACCGTG
ATTTTACTCG GTAAAACCGT CAAAAAACTC GAAGCCGTAT ACGACGTTAT CGAACAGGCG
GGTTACCCAA CTCCTGCGAT CGTGCCGTTA GATTTAAAAG GTGCGACCGA GCAAAACTAC
CGCGATATGG CCGAAACCAT TGGCGAGCAG TTTGGTCACT TAGATGGTTT GCTGCACAAC
GCCAGTTTAC TCGGCGCTTT AGGCCCGTTT GAACACATCG ATATTCCATC ACTCGAAGAT
GTACTTAAAG TCAACGTCAC TTCACAGGTC ATGCTGACTA AGGCCCTGTT GCCGATTATG
CGCCAAGCAC CCAGCGCCTC GATTATCTTT ACCTCAAGCA GTGTTGGCCG TCAGGGCCGC
GCCTACTGGG GGCCCTATGC CTTCTCTAAA TTTGCCACCG AAGGCATGAT GCAAGTGCTC
GCCCACGAAT GTGATGGCAC GTCTGTACGC GTTAATAGCA TTAACCCAGG CGCGACTCGC
ACCGAAATGC GTGCTAAAGC ATACCCTGCC GAAAATCCAT TAGCTTTAAA AACGGCCGAA
GAAATCATGC CAACATACCT CTATTTAATG GGGCAAGATT CTAGCGAAAT TAACGGTCAG
CAATTTAACG CTCAATAA
|
|---|
| Protein sequence | MLEYQAAKDL LKGKTILVTG AGAGIGRAAA IEFAKHGATV ILLGKTVKKL EAVYDVIEQA
GYPTPAIVPL DLKGATEQNY RDMAETIGEQ FGHLDGLLHN ASLLGALGPF EHIDIPSLED
VLKVNVTSQV MLTKALLPIM RQAPSASIIF TSSSVGRQGR AYWGPYAFSK FATEGMMQVL
AHECDGTSVR VNSINPGATR TEMRAKAYPA ENPLALKTAE EIMPTYLYLM GQDSSEINGQ
QFNAQ
|
|---|
| |