| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1444 |
|---|
| Symbol | |
|---|
| ID | 4252022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1689953 |
|---|
| End bp | 1691176 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638118043 |
|---|
| Product | transposase, IS204/IS1001/IS1096/IS1165 family protein |
|---|
| Protein accession | YP_733579 |
|---|
| Protein GI | 113969786 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3464] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.551686 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAG CTGCTTTATA TCAACAAATC TTGGGGCTAA AGGCACCTTG GGTCGTATCC
AGTGTTCAAC TCGATGAACC ACGTCAGAGC ATAATTGTTA CCATCGCCTA CGCTTCTCAA
GCAGGCTTTA AATGCCCTAT ATGCCACAAT GCGAGTCGCC ATTACGATTC CCGTTTCCGA
AAATGGCGTC ACTTGGATAC CTGCCAGTAT CAAACGCTCA TTCAAGCTAA CGTGCCACGA
GTACACTGTA CCTCACACGG TTATCAAACC CTCCAAGTCC CATGGGCCAG TGGCAGCAGT
CGTTACACTG AATTGTTTGA GATGCGTGTA TTAACCTTGC TTGCGATGAG TTCTCTTAAT
GCCGTCAGTC GGTTCTTTAA ACTGAGCTGG GGAGCCATGG ATAGGATTAT GGCGCGCGCT
GTTTATCGTG GACTGGCAAA ACGCAAACTG ATTAATACCG ATTATTTATT GGTCGATGAA
ACCGCTCTTA AAAAGGGGCA TGAATATGTC ACGCTGCTCT CTAATCATGA AGGACAAGTT
TTAGCGGTTT CAGAGGGACG TTCAGCTGCA AGTTTTGATG CCTGCCTAAA ACAGCTGCCT
GCAGATGCAT TACGTCAAAC TCAGTCTATC TGTATGGATA TGAGCCCTAC TTACATTAAA
GCAGCAAAGA AAGCGCTGCC CAATGCAGAG AGGAAAATCG CATTTGATCA CTTCCATGTA
GCCAAGATGC TAACGGAGGC GGTTAACCGG ATCCGCAAAG ACGAGTTATT CAGGTTGGCG
CCGTCAATGC GGCAAGAGGC ACATCGCACA CGTTTTTACT GGTTAAAGCG ACGAGATAAT
CTCAGCGAAC CCGACCGAGA GAGGGTCAAT AGACTCATCC CGGCAATGAT GAATACGGCT
CTTGCATGGT ATTTTAAAGA GCAGGCTCGG AACATCTGGC ATGGCAATAG TGTTCGAGGA
ACAAAGCAGC GATGGAAAGA TTGGATAGCT TTAGCTAAAG CCAGCGGTCT CAAACCCTTA
ATGGCAGTGG CAGATACAAT CGAGAACAAA CTCTGGGGCA TACTTAATGC CATGCGCTTT
GGTCTATCAA ACGGTTTGGC AGAAGCAATC AATAGCCAAG TTAGACAGCT CAGAGTAAAG
GCTATGGGGT ATCGAAATTC AGAGCGATTT CAACGTGCCA TCCTCTTTCA CTTTGGAAAG
CTGGATATGG GGTTCCACCA ATAA
|
|---|
| Protein sequence | MSEAALYQQI LGLKAPWVVS SVQLDEPRQS IIVTIAYASQ AGFKCPICHN ASRHYDSRFR
KWRHLDTCQY QTLIQANVPR VHCTSHGYQT LQVPWASGSS RYTELFEMRV LTLLAMSSLN
AVSRFFKLSW GAMDRIMARA VYRGLAKRKL INTDYLLVDE TALKKGHEYV TLLSNHEGQV
LAVSEGRSAA SFDACLKQLP ADALRQTQSI CMDMSPTYIK AAKKALPNAE RKIAFDHFHV
AKMLTEAVNR IRKDELFRLA PSMRQEAHRT RFYWLKRRDN LSEPDRERVN RLIPAMMNTA
LAWYFKEQAR NIWHGNSVRG TKQRWKDWIA LAKASGLKPL MAVADTIENK LWGILNAMRF
GLSNGLAEAI NSQVRQLRVK AMGYRNSERF QRAILFHFGK LDMGFHQ
|
|---|
| |