| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1426 |
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| Symbol | truA |
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| ID | 4252004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1667524 |
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| End bp | 1668309 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638118025 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_733561 |
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| Protein GI | 113969768 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0400831 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGGATTG CATTAGGTAT TGAATATGAC GGAAGTGGTT ATTTCGGTTG GCAGCGTCAG
GCCGAAGTCG ATTCAGTACA AGGGCAATTA GAACAAGCCT TATCTAAGGT GGCGAATGAA
CCCATCAGCT TGTTCTGTGC GGGGCGAACC GATGCCGGCG TTCATGCGAC TGGGCAGGTG
GTGCATTTCG AGACTAACGC CATACGCAAC GAAGGCGCCT GGACCTTAGG GGTGAATGCC
AATTTACCCG ATAATATCGC CGTTCGTTGG GCTAAAGAGG TGGATGACAG TTTCCATGCC
CGCTTTTCAG CCACGGCCAG ACGTTATCGC TATGTGATTT ACAATCATAA TTTTCGCCCC
GGGATCCTAC GTCACGGCGT GAGCCATTAC CACGGTGATA TCGACGCTGA TAAAATGCAT
GTTGCAGCGC AGGCGCTGCT CGGTGAGCAG GACTTTACCA GTTTTCGTGC CGTCCAATGC
CAATCGAAAA CCCCGTTTCG CAATGTGCAC AGCGTCAAAG TGACGCGTCA GGGCATGTAT
GTGATTGTCG ATATTTCTGC CAACGCCTTC TTGCACCATA TGGTGCGAAA CATTGTCGGC
TCCCTGCTGG AAATTGGCCT AGGCAACCAG CCGCTGACTT GGATGGCGGA TTTACTGGCC
CTTAAAGACC GAAATCAAGC GGCGGCCACC GCCAAACCCA ATGGACTCTA TTTAGTCGAT
GTGACCTATC CCGAGCAGTA TCAACTGCCG AAGTTGGCTT TAGGGCCATT GTTTATGCTG
GATTAA
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| Protein sequence | MRIALGIEYD GSGYFGWQRQ AEVDSVQGQL EQALSKVANE PISLFCAGRT DAGVHATGQV
VHFETNAIRN EGAWTLGVNA NLPDNIAVRW AKEVDDSFHA RFSATARRYR YVIYNHNFRP
GILRHGVSHY HGDIDADKMH VAAQALLGEQ DFTSFRAVQC QSKTPFRNVH SVKVTRQGMY
VIVDISANAF LHHMVRNIVG SLLEIGLGNQ PLTWMADLLA LKDRNQAAAT AKPNGLYLVD
VTYPEQYQLP KLALGPLFML D
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