| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1425 |
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| Symbol | |
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| ID | 4252003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1664031 |
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| End bp | 1667420 |
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| Gene Length | 3390 bp |
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| Protein Length | 1129 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638118024 |
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| Product | hypothetical protein |
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| Protein accession | YP_733560 |
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| Protein GI | 113969767 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000113276 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTC GCACTTCGTA TCTTGTGGGC CTGATGGCCA CCGTTTTAGC TGTTTCTTCC
ACGACCTCTT TTATTGATCC TGCGATAGCT GCTGATACTC CCAAAATAAA ACCTTTAAAA
ATCATGGGGC CAGACGGACA GATCCGCCAG GTCAATCATC AATATGGACC AACGACCTCT
AAGGACACTT TCTGGAGTAT TGCGCAAAAA GTCCGTCCCG ACGCCAGTGT CAGTGTTTAT
CAGGTGATGG CCGCAGTATT TGATGCAAAC CCCCATGCGT TTAACTCCGA CAGTTACAAC
AGCCTCGAAC GTGGCATGAT TTTGCTGATC CCTTCGAAAG AAGTGATGCT CGCCATCCCC
AATAGTTTGG CCATTGCCCG CGCCGAGCGC AGCGATAAGC AGGCTCGTTC TGGTGCTAAA
GCCACGCCTA AGGCAGAAAC CAAACCTGCG ACTAAGCCAG CTGCACCGAC TCAGACCGTC
GCACAGCCTA AACCTAAGGT GGAGACGCCA CCTAAGGCCG AGGTGAAGCC CGAAGCGGCG
AAAGTGACCA ATACCGAAGT GGCTGCGACG CCAACCGCGC CTAAGATGGT GAGCTCGGAT
ATCAATGCAC GCCTCGAAGC GGCGGAGAGC AAGAATTTAT CCCTGACCGA TGAGTTAGCC
AGAGCGCAAG ATCAACTCGC GGTGAGAAAT ACCGATGTTG AGACACTCAA AGCTAAGGTT
GAAGAATTAA ATCAACAGAT TGCGGTATTA GAAGAAACCC TACAGGCCAG CAAGAAGCAA
AACCTTGCAC TTAAAGCCGA GGTTGAGGCC GCGCAAACGC CAGAGACCGC GACCACAGAC
GAGCCTGCCA TGCCAGCAGA GCCAGATGAT CTGTGGCGTA ACCTGATGAG TAATCCACTG
CTCCTCGTTG CAGCGGCGGT GATCCCCGCA TTATTGCTAC TGGTCCTCGT TTTCTGGCTA
TTACGCCGTA AACGTAATAA AGAACGTCGT GAGCTTGAAT CACAGCAGGC GGCTATGATG
GCCGCGGGTG CGGCTGGCGT GGCGAGTGCG TCCGTACTGG CGATGGACGA TGACGACCTC
GGCGACATGG CGGTGCATTT AGATACTGAC CATGCTGATT CGATCGACAG CTTACTCGAT
GTCGGCAGTG TCGACCTGCA ACCCGAGCAG GACATGACAG ATAGCCATGA ACAGATGGAC
ATGGCATCAG AAATGTTTAT TGACCCTGGT GTCAGCACTG AGCCAGAACC ACAATTTGAA
GAGGATGAAG GCCAGTCTCT GGATGATCTC TGGGCAGAGG CCATGGGGGA CCAAGAGGAA
GCCGAAGCCT TTGCCGAAGA AAAAGCTCCA TCCGGCAATA TTATTGAGGA AGAAGACCTC
GATGCACTGC TGGCCGGATT GGGCGCTGAT GAAGAAGATA CCCCACAGGA AGCTCAAGCT
TCCGCAGCGG GGCTTGACGA TCTTGACGAA TTAGCCGGTT TTGATTTACC TGCAGAACCT
GCGCCAGATA CAGAGGATGA AGATTTAGCC GCAGCCATTG CTGCCGAACT AGATTCTGGA
CTAGGCGCTG ACTTAGCCAC AGAGCTGGAC GCTGAGCTTG AAAACGATGC AGCGCCAGCT
GACGATGATA TTGATGCGTT ACTCGCTGGC TTTAATCAGC CAGAGATGAA AGAGACTGCC
GAAGTTGCCG ATGAGGACCT CGATGCCTTA TTGGCCGATT ATGACAAGGC GCCAGCAGAA
GCCACAGATG ATCTCGGCGA TGAAATTGCC GCCGAATTGG ATGATGACTT AGCCGAGTTG
GGGGTTGCGC AAACCGATGA TATCGATGCC TTGCTGGCCG ATTTTGATAA ACCCGCCGCG
CCAGAACCCG ATTTAAGCGA TGAAATTGCT GCTGAGCTCG ATGATGATTT GAATGACATT
GACGTGAGCG GCTCTGATGA TATTGATGCG TTACTTGCTG GCTTAGATGC TCCCGCGCAG
CCCGATCCTG AAGTCGCCGC GGCGATTGCC GCCGAGTTGG ATGATGAACT TGCTCCCGAC
TTACCAACGA GCGATGAAGA CCTCGACCAG TTATTGGCAG GCTTTAACAC GCAAGAAGCG
CTCGTCGAAG AGGCCGTTGT CGACGATACC GTTGCCGAGG ATATGGCTCA CGCTGAAGCC
GCCCTTGAGC GCGATGACAT TGCCGCCGAA CTCGAAGCCG CATTACCTGA AGACTTGTCA
ACGGCAGAGG ACGACCTCGA TTCTTTATTA GCCGAGTTCG ATGTGCCTGA ACAAGCCGAG
GCGGATGCCG ACGACTTTAA CTTCGACTTA GAAACCACCC ATGTCGAGCC AGAAGAAAAA
GACGAGGAAG AAGATTTACT CAAGGGCATT GGTGCCGCCG CCCATGCCAT TGATGGCACG
GACGATACCT TCGAACTGAG CGAAGAGATT GCGGATAACC AAGACAGTTC GGATAACAGT
GCCGATGACG CAGCCACAGA GCCTAAGTTT ACAGGCTTTG ATGAAGATAC TGACGATATC
GCACCTGCTC TTGGTGCCGC TGTCGCCGCA TCTGCCGTGG CGGCCGCCGC GAGTGCGAAG
GAAAAAGAGT CATCTTTCTT CAATGACTTA AAGGCCAATA AGAGTAAGGA TCCCCATGTT
CTCGATTGGG ATACCGAACT TAATTTTGCG CCTACGCCTG AAGCGAAAAC GCCGGTCAAA
CCCGAAAGCG ATTTGCCTTT AGATCCGGTA CCAGTGCAGG GCACGTCGCG TAAACCGCTA
GAGTTTGCGC CAGATGCAAA GCCTGAGGTT GATGCCAAAA ATACGGCTGC GAGCACTGAG
TTTAACCTCG ACGATGAGCT GGATTTAGGC CGCGAGTTCG ATTTAAAAGA CGATACTGAT
GATGTCGATT TAAGCGATGA CAGCGTACTT GCCGCCTTTA GCACCAATAC CGAACTCGAA
GAGGAAGAGA TATTAACCCC TGAGGACAGC TTTGCCCTCG ATGACGAGCA TACGCTCACC
GTAGATGAGG CTCTAGCGGC GCTCGATGCG CAGGAGTCGC GCAAGACGAA GAAATTTGTC
CCGGAGCATG ATTTAACCAA CTTCCAAAAC GAGCATGGCT ATATCGATAT CGAAAAACTG
CTTAATGATG CCGAGCAGGA TAGCGCTGAG ACAGATCTCT ATCCCGAAAT GGATGTTGAG
ATGAGTGATG TGGGCGCCCT GATTGGCGAT GCCGCCATGA TCGACGTGGA CGATGAGGAA
AACTCGGTCA ATGCCAAGCT CGATTTAGCC CGTGCCTATA TCGAAATCGA TGACAGCGAC
AGTGCCAAAG CATTGCTACG GGAAGTTCAA ATCGACGGTA ACGAGCGTCA GCAAGAAGAA
GCTGCCCGCT TACTTAAAGA GATGGGTTAA
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| Protein sequence | MKFRTSYLVG LMATVLAVSS TTSFIDPAIA ADTPKIKPLK IMGPDGQIRQ VNHQYGPTTS
KDTFWSIAQK VRPDASVSVY QVMAAVFDAN PHAFNSDSYN SLERGMILLI PSKEVMLAIP
NSLAIARAER SDKQARSGAK ATPKAETKPA TKPAAPTQTV AQPKPKVETP PKAEVKPEAA
KVTNTEVAAT PTAPKMVSSD INARLEAAES KNLSLTDELA RAQDQLAVRN TDVETLKAKV
EELNQQIAVL EETLQASKKQ NLALKAEVEA AQTPETATTD EPAMPAEPDD LWRNLMSNPL
LLVAAAVIPA LLLLVLVFWL LRRKRNKERR ELESQQAAMM AAGAAGVASA SVLAMDDDDL
GDMAVHLDTD HADSIDSLLD VGSVDLQPEQ DMTDSHEQMD MASEMFIDPG VSTEPEPQFE
EDEGQSLDDL WAEAMGDQEE AEAFAEEKAP SGNIIEEEDL DALLAGLGAD EEDTPQEAQA
SAAGLDDLDE LAGFDLPAEP APDTEDEDLA AAIAAELDSG LGADLATELD AELENDAAPA
DDDIDALLAG FNQPEMKETA EVADEDLDAL LADYDKAPAE ATDDLGDEIA AELDDDLAEL
GVAQTDDIDA LLADFDKPAA PEPDLSDEIA AELDDDLNDI DVSGSDDIDA LLAGLDAPAQ
PDPEVAAAIA AELDDELAPD LPTSDEDLDQ LLAGFNTQEA LVEEAVVDDT VAEDMAHAEA
ALERDDIAAE LEAALPEDLS TAEDDLDSLL AEFDVPEQAE ADADDFNFDL ETTHVEPEEK
DEEEDLLKGI GAAAHAIDGT DDTFELSEEI ADNQDSSDNS ADDAATEPKF TGFDEDTDDI
APALGAAVAA SAVAAAASAK EKESSFFNDL KANKSKDPHV LDWDTELNFA PTPEAKTPVK
PESDLPLDPV PVQGTSRKPL EFAPDAKPEV DAKNTAASTE FNLDDELDLG REFDLKDDTD
DVDLSDDSVL AAFSTNTELE EEEILTPEDS FALDDEHTLT VDEALAALDA QESRKTKKFV
PEHDLTNFQN EHGYIDIEKL LNDAEQDSAE TDLYPEMDVE MSDVGALIGD AAMIDVDDEE
NSVNAKLDLA RAYIEIDDSD SAKALLREVQ IDGNERQQEE AARLLKEMG
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