| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1400 |
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| Symbol | |
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| ID | 4251419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 1630137 |
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| End bp | 1630700 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638117999 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_733535 |
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| Protein GI | 113969742 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.255306 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000139495 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTGCTA ACTGGCGAAA GAAATCCGTC GAGCCTGCGG TCTCTTCTGA CATGCTGAGC
AAACAACGAC GATACAACAG CCTAGTCAAG GCGCTGCACG CCGATATCTT CCGTTATGCC
TTTTGGTTAT GCGGCGATAA GCAGGTGGCA GAAGACATCA CCCAAGAAAC CTTCTTGCGG
GCATGGCGCT CTTTAGATTC CCTACAGGAT GATAAAGCGG CGAAGGCTTG GCTGATCACG
ATTCTGAGGC GCGAAAATGC CCGTCGATTC GAGCGCAAAC AATTTGATTA CGCCGATATC
GAACAAGACA GCTTAGAAGA TCACATTGCC TCCAGCACGG AAGAGCAAAC CGAGCAGTAC
TGGTTAAGGC GACAAATCGC TAAGCTGGAT ATTGAATATC GGGAGCCCCT ATTGCTGCAG
TTAATCGGTG GCTTTAGCGG TGATGAAATT GCCCAGCTCT TGGACTTAAA CCGCAACACT
GTCATGACGC GCTTATTTCG GGCGAGGAAC CAATTGAAAG AACTACTTGA GAAAACCGAT
GTGAGAGGTC AATCCAATGG ATGA
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| Protein sequence | MFANWRKKSV EPAVSSDMLS KQRRYNSLVK ALHADIFRYA FWLCGDKQVA EDITQETFLR
AWRSLDSLQD DKAAKAWLIT ILRRENARRF ERKQFDYADI EQDSLEDHIA SSTEEQTEQY
WLRRQIAKLD IEYREPLLLQ LIGGFSGDEI AQLLDLNRNT VMTRLFRARN QLKELLEKTD
VRGQSNG
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