| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1393 |
|---|
| Symbol | |
|---|
| ID | 4251412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 1620354 |
|---|
| End bp | 1623602 |
|---|
| Gene Length | 3249 bp |
|---|
| Protein Length | 1082 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638117992 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_733528 |
|---|
| Protein GI | 113969735 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000988639 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000000715255 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACG CTACTGAATC TTCGACGTCA CTTGGCATTT CGGGTCGCAT TGCGGCCGCA
TTTCAAAACA GTGCCATTAC CCCACTGCTG GCACTTTTGG GCTTGTTACT CGGCTTGTTT
GCCATCTTAG TGACCCCAAA GGAAGAAGAA CCGCAGATTG ACGTCACCTT TGCCGACGTC
TTTATCCCTT TCCCCGGCGC GACCCCGACC GAAGTGGAAA ACTTAGTCAC CCTGCCCGCC
GAACAAGTGA TTTCAGAGCT CAAAGGGATA GACACGCTCT ATTCTTTCTC CCAGCCCGAT
GGCGCGATGA TCATTGTGAT CTTTAAGGTC GGCGTAACCC GCAACGATGC CATTGTCAGC
CTCTACAACC AGATTTATTC CAATATGGAT AAACTGCCGC AGGGCGCGGG TGTTGGCGAG
CCATTGATTA AACCACGCGG TATCGATGAT GTGCCGATTG TTAGCCTAAC ACTCTGGTCC
AAAGACAAAC AGGTCTCGGC CGAACAGTTG ACCCATGTGG CGTTAGGGCT AGAAACCGAA
ATCAAGCGGA TCCCGGGTAC GCGGGAGATT TACACCGTTG GCCAACATGA GATGGTGGCC
AATGTTCGCA TCGATCCCGC TAAGATGAAC AGCTTCAATC TCACCTACGA CAAGTTGAGA
CAGAGCCTGA ATGACAATAA TCACATCTCG ATGCCAGCGT CTTTAGTGCA AGGTAATCAA
GAAATTAAGG TTCAGGCTGG CCAGTTTTTG CAAACTATAG ACGATGTTAA ACAGCTGGTA
GTGAGTATTT CGCAGGATAA GCAGGGTAAA CCTATCCCCG TGTATTTGGC CGATATTGCC
GATATCAGTT TAAAGAGTGA TATTCCCACC CAAAGTGTTT GGCATAGCGA CAAGACGGAT
ATTTACCCCG CGGTGACCAT CGCCATTGGT AAGCAGCCGG GGCAAAACGC CGTTGATATT
GCCGATGCGA CCCTCGCGCG CATTGCTAAA GTCAAGAATG TGTTGATCCC CAGCAATGTC
GAAGTGACAG TCTCGCGCAA CTATGGTGAG ACGGCGGCGG ATAAATCTAA CACCCTTATT
CTTAAGCTGA TTTTTGCCAC CAGTGCCGTT GTCGTATTGG TGTTTTTAAC CATGGGCGCC
CGCGAATCAC TGGTGGTAGG TGTCGCCATT ATTATCACCT TGGCGATCAC CCTGTTCGCC
TCTTGGGCGT GGGGATTTAC CCTTAACCGA GTGTCACTCT TCGCGCTGAT TTTCTCCATC
GGGATCTTGG TCGACGATGC CATTGTGGTG GTGGAGAATA TCCATCGGCA CATGGCGCTC
GGTAAAAAAT CCTTTAGTGA ACTCATCCCC GTTGCGGTCG ATGAAGTGGG CGGCCCAACG
ATTCTCGCCA CCTTTACCGT TATCGCGGCC CTGCTGCCCA TGGCATTTGT GTCGGGATTA
ATGGGCCCTT ATATGAGCCC GATCCCCATC AACGCCAGTA TGGGCATGCT GATTTCCCTG
GTGGTCGCCT TTATGGTAAC CCCATGGCTG AGTCGTAAGC TGCTCAAACA CCATAGTGGC
TCGGTGACTG ACGCCACGCA CAGCAGCGAT GCCGATGCTC AGATGAACGA GAGCAAAATG
GTGCGCCTGT TTACCCGTTT AATCGGTCCC TTCCTGCTAG GTAAAGGTGC CCGTAAAGCA
CGGATTGGGC TCGCCGCTGG GGTCTTTGTG CTTATCGGTA TCGCCGTGGC CTTGCCCGTA
GGTCAGTTCG TGGTGTTAAA GATGCTGCCC TTCGATAATA AATCCGAGTT CCAAGTCATG
GTGGATATGC CTGAAGGCAC CCCAGTGGAA CAAACCCAGC GGGTACTTCA GGATTTAAGT
CGCTACCTTG TCACTGTGCC CGAGGTGGAG CATTTGCAGC TGTATGCCGG CACTAATGCA
CCGATGAACT TTAACGGCTT AGTGCGCCAC TATTTTCTAC GTCACAGCCA AGAGCTTGGC
GATATTCAGG TCAATCTAGT CGATAAAAAG CATCGCAAGC GTGACAGTCA CAGCATTGCG
CTATCGGTCC GTGAAGAATT GCAGCATATC GGCGCTAAGT ATCAGGCCAA TGTGAAAGTC
GTCGAAGTGC CACCTGGCCC GCCAGTCTGG TCACCAATTG TGGCCGAAGT CTATGGTCCA
AGTCCTGCGA TTCGCGAACA AGCGGCCTAC GAGCTGCAGT CGCTGTTCCG TGAGACCAAA
GATGTGGTCG ATATTGATAT TTTCTTGCCC GCAGCACAGC AAAAATGGCA AGTGATGATC
GACCGCTCTA AGGCCAGCCT AATGGCGGTG CCCTATAGCA ATATCGTTGA TTTAATTGCA
ACTTCGGTTG GCGGCAAGGA TGTAAGCTAC TTGCATATCG CGCAGCAAAA ACAACCTGTG
CCTATCCGCT TGCAACTACA GGAAGGGGCA AAAATCGATT TAGAGCAAGT GCTGAATATG
AAGCTACAGA GTCAAACGGG GCAATCTGTG CCCGTGTCTG AGCTGGTGAC GATTAAGCGT
GGAAAAATCG ATGCTCCTAT CATCCATAAG AATATGATCC CTATGGTGAT GGTGGTCGCC
GATATGGCCG GTCCGCTAGA CAGTCCACTC TATGGCATGT TCGACATGGC GGGCAAAATC
GACGGCGACG GTGGCTTAGG TTTCGATCAG CATTATATCC ACCAACCAAC AGGACTAGAC
TCAGTCGCCG TGCTCTGGGA CGGTGAATGG AAGATCACCT ATGAAACCTT CAGGGATATG
GGGATAGCCT ATGCAGTGGG GATGATTGCG ATTTACTTAT TGGTCGTCGC TCAATTTAGA
TCCTATCTGG TGCCACTCAT CATTATGGCG CCGATCCCAC TGACAGTGAT AGGAGTGATG
CCGGGGCATG CGCTGCTCGG CGCGCAATTT ACCGCGACTT CAATGATTGG CATGATTGCC
TTAGCAGGGA TTATTGTCCG TAACTCAATA TTATTAGTGG ATTTTATCAA TCAGGAAACC
GCCTCAGGCG TTCCCTTTGA GCGCGCAGTG ATTCACTCGG GCGCCGTGCG GGCTAAACCG
ATTATGCTGA CCGCTTTGGC GGCCATGATT GGCGCCCTGT TTATCTTAGA CGACCCAATC
TTCAACGGGC TTGCGATCAG TCTGATTTTC GGGATTTTTA TCTCGACCTT ACTGACCTTA
ATCGTCATCC CAGTGCTTTA CTACGCAGCG ATGAAAAATC GCATAAACTT AACTCAAACA
GCCGATTAA
|
|---|
| Protein sequence | MKHATESSTS LGISGRIAAA FQNSAITPLL ALLGLLLGLF AILVTPKEEE PQIDVTFADV
FIPFPGATPT EVENLVTLPA EQVISELKGI DTLYSFSQPD GAMIIVIFKV GVTRNDAIVS
LYNQIYSNMD KLPQGAGVGE PLIKPRGIDD VPIVSLTLWS KDKQVSAEQL THVALGLETE
IKRIPGTREI YTVGQHEMVA NVRIDPAKMN SFNLTYDKLR QSLNDNNHIS MPASLVQGNQ
EIKVQAGQFL QTIDDVKQLV VSISQDKQGK PIPVYLADIA DISLKSDIPT QSVWHSDKTD
IYPAVTIAIG KQPGQNAVDI ADATLARIAK VKNVLIPSNV EVTVSRNYGE TAADKSNTLI
LKLIFATSAV VVLVFLTMGA RESLVVGVAI IITLAITLFA SWAWGFTLNR VSLFALIFSI
GILVDDAIVV VENIHRHMAL GKKSFSELIP VAVDEVGGPT ILATFTVIAA LLPMAFVSGL
MGPYMSPIPI NASMGMLISL VVAFMVTPWL SRKLLKHHSG SVTDATHSSD ADAQMNESKM
VRLFTRLIGP FLLGKGARKA RIGLAAGVFV LIGIAVALPV GQFVVLKMLP FDNKSEFQVM
VDMPEGTPVE QTQRVLQDLS RYLVTVPEVE HLQLYAGTNA PMNFNGLVRH YFLRHSQELG
DIQVNLVDKK HRKRDSHSIA LSVREELQHI GAKYQANVKV VEVPPGPPVW SPIVAEVYGP
SPAIREQAAY ELQSLFRETK DVVDIDIFLP AAQQKWQVMI DRSKASLMAV PYSNIVDLIA
TSVGGKDVSY LHIAQQKQPV PIRLQLQEGA KIDLEQVLNM KLQSQTGQSV PVSELVTIKR
GKIDAPIIHK NMIPMVMVVA DMAGPLDSPL YGMFDMAGKI DGDGGLGFDQ HYIHQPTGLD
SVAVLWDGEW KITYETFRDM GIAYAVGMIA IYLLVVAQFR SYLVPLIIMA PIPLTVIGVM
PGHALLGAQF TATSMIGMIA LAGIIVRNSI LLVDFINQET ASGVPFERAV IHSGAVRAKP
IMLTALAAMI GALFILDDPI FNGLAISLIF GIFISTLLTL IVIPVLYYAA MKNRINLTQT
AD
|
|---|
| |