| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1385 |
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| Symbol | secF |
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| ID | 4251404 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1612889 |
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| End bp | 1613836 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638117984 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_733520 |
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| Protein GI | 113969727 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00983524 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000000302266 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTAGAAA TTTTGTCTTT AAAACGTACG GTTAACTTCC TCCGTCATGC GCTGCCTATC
AGTATCATGT CTGCCATTTT GGTATTTGGT TCGCTGGTGT CCTTGGCGAC CAAAGGCATT
AACTGGGGTT TAGACTTTAC CGGCGGTACT GTGGTTGAGA TGGAGTTCAC TCAACCTGTC
GATTTGAACG TGTTACGTAC TAAGCTGTCT GCGCCTGAAT TGGACGGTGC AGTGGTGCAA
AACTTCGGTT CGAGCCGTGA CGTATTAGTG CGTCTATCGG TGAAAGAAGG CGTGAGCAGC
GATGTACAGG TCAAATCTGT CATGGCTGCG GCTCAACAAG TGGATGCGGG CGTTCAACAG
AAACGTGTTG AATTCGTTGG TCCTCAAGTG GGTAAAGAAC TGGCCGAACA GGGCGGTTTA
GCGGTATTGG TCGCGCTTAT CTGTATCATG ATCTACGTGT CTTTCCGTTT CGAATGGCGT
TTAGCCTTCG GTTCGGTAGC AGCACTTGCC CACGACGTGA TTGTGACCTT AGGTGTGTTC
TCTGTGTTCC AACTGGAATT CGACCTGACC GTATTAGCCG GCGTGTTAAC CGTTGTGGGT
TACTCACTCA ACGATACCAT CGTTGTGTTT GACCGTATCC GTGAAAACTT CCTCAAGATG
CGTAAGAGCG AGCCAGAAGA AGTGGTCAAC GTCTCTATCA CGCAAACCAT GAGCCGTACC
ATTATCACTA CGGGTACGAC GCTGGTGACC GTTGTGGCGC TGTTCCTGAA GGGCGGCACT
ATGATCCACG GTTTTGCGAC AGCACTCTTG TTGGGTATTT TCGTCGGTAC CTATTCTTCT
ATCTACGTAG CAAGTTACCT TGCGATCAAA CTGGGCATTT GCCGTGAGCA TATGATGCCA
GTTGAAGTCG AGAAAGAAGG TGCTGACCAG CCTTCGATGA TGCCTTAA
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| Protein sequence | MLEILSLKRT VNFLRHALPI SIMSAILVFG SLVSLATKGI NWGLDFTGGT VVEMEFTQPV
DLNVLRTKLS APELDGAVVQ NFGSSRDVLV RLSVKEGVSS DVQVKSVMAA AQQVDAGVQQ
KRVEFVGPQV GKELAEQGGL AVLVALICIM IYVSFRFEWR LAFGSVAALA HDVIVTLGVF
SVFQLEFDLT VLAGVLTVVG YSLNDTIVVF DRIRENFLKM RKSEPEEVVN VSITQTMSRT
IITTGTTLVT VVALFLKGGT MIHGFATALL LGIFVGTYSS IYVASYLAIK LGICREHMMP
VEVEKEGADQ PSMMP
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