Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1384 |
Symbol | secD |
ID | 4251403 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1611026 |
End bp | 1612876 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638117983 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_733519 |
Protein GI | 113969726 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000494152 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000000727457 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGTTAAATA AATACCCAAT GTGGAAAAAC ATTATGGTGG TGCTCGTCAT CGCCATAGGT TGTTTCTATG CCGTACCTAA CCTGTTCGGT GAAGATCATG CGGTGCAAGT AGTGGCGACT CGAGGTGCTG AAGTCACGGC ATCTACCCAA GCCAGAGTGA ACGAGCTGTT AGCCAGTAAG GGCATTGCGG TAAAACGTTC TGAGCTTGAA AAAGGCCAAT TGTTGGTTCG CGTACAAAAC GCGGATCAAC AGTTGCTGGC CAAGGAAACC ATCGCCGAAG AATTAGGTGA TAAGTTTACC GTGGCGCTTA ACCTTGCCCC TGCGACGCCG CAGTGGCTCG AGTCCATGGG CGGTAGCCCA ATGAAACTCG GTCTGGACCT TCGTGGTGGT GTGCACTTCT TGATGGAAGT GGACATGGGC GAAGCCATCC GCAAGATGGA AGAGGCTAAA ATTGCCGATT TCCGTTCACA ATTGCGTGAA GAAAAAATCC GTTACGCTGG CATTCGCAAC AATGCTCAAG GTATCGAGAT TAAATTCCGT GATGCCGAAA GTTTAGCCAG TGCAGAACGT TTCTTAAAAT CTCGCAGCAA CGATATGGTG TTCAGCGATG TGAGCAAGGG TGAAGATTTT GCCCTGCAAG CCGTGATGAG CGAAATCTAT CTCAAGCAGA TTAAAGAAGA AGCGCTGCAG CAAAACATTA CCACTATCCG TAACCGTGTG AACGAGTTAG GGGTAGCTGA GCCTGTGGTC CAACGCCAAG GTGCTGAGCG CATTATCGTT GAGCTGCCAG GTGTACAAGA CACTGCCCGC GCCAAGGAAA TCTTAGGTGC AACCGCATCG ATTGAATTCC ACATGGTGGA CGATAAGGCC GACCCAAATG CGGCGCAATC TGGTCGTGTA TCAGCGGGTT CTGAGGTGTA TCAACGCCGT GAAGGCGGTC AAGTGGTATT GAAGAAAGAA GTGATGCTAA CGGGTGATCA TATCACTGGC GCACAACCTA GCTTCGACCA ATACAGCCGT CCACAGGTGA GCATCAACCT CGATGCCAAA GGCGGTACTA TTTTCTCTAA CGTGACTAAG GACAATATCG GTAAACCGAT GGCGACCTTA TTCATCGAAT ATAAAGACAG CGGTGAGCGT AACGCCGATG GCAGCGTCAA GATGCAGAAA ATCCAAGAAG TGATTTCTGT GGCGACCATT CAAGCGCGTT TAGGTCGTAA CTTTGTGATC ACCGGCTTAA GCCACGGTGA AGCACAAAAC CTCGCACTGC TGCTGCGTGC CGGTGCCCTG ATTGCGCCAG TATCTATTGT GGAAGAACGT ACTATCGGTC CAAGCCTAGG TGCGGAAAAC ATCGAAAGCG GTGTGCAAGC CATGATTTGG GGTATGGCAG TCGTACTTAT CTTCATGCTG GTTTACTACC GTAGTTTCGG CTTGATCGCT AACTTAGCCT TAACGGCCAA CTTAGTGATG GTGGTTGGGG TGATGTCTAT GATCCCTGGC GCCGTATTAA CCCTGCCTGG TATTGCCGGT ATGGTGTTAA CTGTGGGTAT GGCGGTTGAC GGTAACGTAC TGATTTACGA ACGTATCCGT GAAGAGTTAC GTGCAGGTCG CAGCGTACAG CAGGCGATTC ACGAAGGTTA CGGTAACGCA TTCTCTACCA TCGCCGACGC TAACATCACT ACCTTCTTGA CAGCGCTGAT CTTGTTCGCC GTGGGTACTG GCGCGATCAA AGGCTTCGCG GTGACCCTGA TGATCGGTAT TGCGACATCG ATGTTTACCG CTATCGTGGG TACTCGCTCA ATCGTGAACG CGATTTGGGG CGGTAAGCGC GTGAAGACGC TGTCTATCTA A
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Protein sequence | MLNKYPMWKN IMVVLVIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ARVNELLASK GIAVKRSELE KGQLLVRVQN ADQQLLAKET IAEELGDKFT VALNLAPATP QWLESMGGSP MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK IADFRSQLRE EKIRYAGIRN NAQGIEIKFR DAESLASAER FLKSRSNDMV FSDVSKGEDF ALQAVMSEIY LKQIKEEALQ QNITTIRNRV NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DPNAAQSGRV SAGSEVYQRR EGGQVVLKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSNVTK DNIGKPMATL FIEYKDSGER NADGSVKMQK IQEVISVATI QARLGRNFVI TGLSHGEAQN LALLLRAGAL IAPVSIVEER TIGPSLGAEN IESGVQAMIW GMAVVLIFML VYYRSFGLIA NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ QAIHEGYGNA FSTIADANIT TFLTALILFA VGTGAIKGFA VTLMIGIATS MFTAIVGTRS IVNAIWGGKR VKTLSI
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