Gene Shewmr4_1384 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1384 
SymbolsecD 
ID4251403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1611026 
End bp1612876 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content51% 
IMG OID638117983 
Productpreprotein translocase subunit SecD 
Protein accessionYP_733519 
Protein GI113969726 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000494152 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000727457 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGTTAAATA AATACCCAAT GTGGAAAAAC ATTATGGTGG TGCTCGTCAT CGCCATAGGT 
TGTTTCTATG CCGTACCTAA CCTGTTCGGT GAAGATCATG CGGTGCAAGT AGTGGCGACT
CGAGGTGCTG AAGTCACGGC ATCTACCCAA GCCAGAGTGA ACGAGCTGTT AGCCAGTAAG
GGCATTGCGG TAAAACGTTC TGAGCTTGAA AAAGGCCAAT TGTTGGTTCG CGTACAAAAC
GCGGATCAAC AGTTGCTGGC CAAGGAAACC ATCGCCGAAG AATTAGGTGA TAAGTTTACC
GTGGCGCTTA ACCTTGCCCC TGCGACGCCG CAGTGGCTCG AGTCCATGGG CGGTAGCCCA
ATGAAACTCG GTCTGGACCT TCGTGGTGGT GTGCACTTCT TGATGGAAGT GGACATGGGC
GAAGCCATCC GCAAGATGGA AGAGGCTAAA ATTGCCGATT TCCGTTCACA ATTGCGTGAA
GAAAAAATCC GTTACGCTGG CATTCGCAAC AATGCTCAAG GTATCGAGAT TAAATTCCGT
GATGCCGAAA GTTTAGCCAG TGCAGAACGT TTCTTAAAAT CTCGCAGCAA CGATATGGTG
TTCAGCGATG TGAGCAAGGG TGAAGATTTT GCCCTGCAAG CCGTGATGAG CGAAATCTAT
CTCAAGCAGA TTAAAGAAGA AGCGCTGCAG CAAAACATTA CCACTATCCG TAACCGTGTG
AACGAGTTAG GGGTAGCTGA GCCTGTGGTC CAACGCCAAG GTGCTGAGCG CATTATCGTT
GAGCTGCCAG GTGTACAAGA CACTGCCCGC GCCAAGGAAA TCTTAGGTGC AACCGCATCG
ATTGAATTCC ACATGGTGGA CGATAAGGCC GACCCAAATG CGGCGCAATC TGGTCGTGTA
TCAGCGGGTT CTGAGGTGTA TCAACGCCGT GAAGGCGGTC AAGTGGTATT GAAGAAAGAA
GTGATGCTAA CGGGTGATCA TATCACTGGC GCACAACCTA GCTTCGACCA ATACAGCCGT
CCACAGGTGA GCATCAACCT CGATGCCAAA GGCGGTACTA TTTTCTCTAA CGTGACTAAG
GACAATATCG GTAAACCGAT GGCGACCTTA TTCATCGAAT ATAAAGACAG CGGTGAGCGT
AACGCCGATG GCAGCGTCAA GATGCAGAAA ATCCAAGAAG TGATTTCTGT GGCGACCATT
CAAGCGCGTT TAGGTCGTAA CTTTGTGATC ACCGGCTTAA GCCACGGTGA AGCACAAAAC
CTCGCACTGC TGCTGCGTGC CGGTGCCCTG ATTGCGCCAG TATCTATTGT GGAAGAACGT
ACTATCGGTC CAAGCCTAGG TGCGGAAAAC ATCGAAAGCG GTGTGCAAGC CATGATTTGG
GGTATGGCAG TCGTACTTAT CTTCATGCTG GTTTACTACC GTAGTTTCGG CTTGATCGCT
AACTTAGCCT TAACGGCCAA CTTAGTGATG GTGGTTGGGG TGATGTCTAT GATCCCTGGC
GCCGTATTAA CCCTGCCTGG TATTGCCGGT ATGGTGTTAA CTGTGGGTAT GGCGGTTGAC
GGTAACGTAC TGATTTACGA ACGTATCCGT GAAGAGTTAC GTGCAGGTCG CAGCGTACAG
CAGGCGATTC ACGAAGGTTA CGGTAACGCA TTCTCTACCA TCGCCGACGC TAACATCACT
ACCTTCTTGA CAGCGCTGAT CTTGTTCGCC GTGGGTACTG GCGCGATCAA AGGCTTCGCG
GTGACCCTGA TGATCGGTAT TGCGACATCG ATGTTTACCG CTATCGTGGG TACTCGCTCA
ATCGTGAACG CGATTTGGGG CGGTAAGCGC GTGAAGACGC TGTCTATCTA A
 
Protein sequence
MLNKYPMWKN IMVVLVIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ARVNELLASK 
GIAVKRSELE KGQLLVRVQN ADQQLLAKET IAEELGDKFT VALNLAPATP QWLESMGGSP
MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK IADFRSQLRE EKIRYAGIRN NAQGIEIKFR
DAESLASAER FLKSRSNDMV FSDVSKGEDF ALQAVMSEIY LKQIKEEALQ QNITTIRNRV
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DPNAAQSGRV
SAGSEVYQRR EGGQVVLKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSNVTK
DNIGKPMATL FIEYKDSGER NADGSVKMQK IQEVISVATI QARLGRNFVI TGLSHGEAQN
LALLLRAGAL IAPVSIVEER TIGPSLGAEN IESGVQAMIW GMAVVLIFML VYYRSFGLIA
NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ
QAIHEGYGNA FSTIADANIT TFLTALILFA VGTGAIKGFA VTLMIGIATS MFTAIVGTRS
IVNAIWGGKR VKTLSI