Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1382 |
Symbol | tgt |
ID | 4251401 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1609525 |
End bp | 1610649 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638117981 |
Product | queuine tRNA-ribosyltransferase |
Protein accession | YP_733517 |
Protein GI | 113969724 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming [TIGR00449] tRNA-guanine transglycosylases, various specificities |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000246245 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000118913 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAATTTG AACTCGACAC TACCGACGGC CGTGCGCGCC GTGGTCGCTT GATTTTTGAA CGCGGCACGG TGGAAACCCC AGCTTTTATG CCTGTTGGTA CTTACGGCAC GGTAAAAGGC ATGACGCCTG AAGAAGTGCG TGCTACTGGT GCGGACATTC TGCTCGGTAA CACTTTCCAC CTGTGGTTAC GTCCAGGCGA AGAAATCATG CGTAAGCATG GTGACTTGCA CGATTTTATG AACTGGCAGC GTCCTATTCT GACCGATTCG GGCGGTTTCC AAGTGTTCAG TTTGGGTGAC ATTCGTAAAA TTACCGAAGA AGGTGTGCAT TTCCGTTCGC CAATCAACGG CGAGAAAATC TTCTTAGATC CTGAAAAATC AATGCAAATT CAACATGCAT TGGGCAGTGA TGTGGTGATG ATTTTTGACG AATGTACTCC GTATCCGGCG ACAGAAGATG AAGCGCGCAA GTCAATGCAG ATGTCACTGC GTTGGGCTAA GCGTTCACGC GACGAGTTCG ACCGTCTGGA AAACCCCAAT TCATTATTCG GGATCATCCA AGGCAGTGTT TATGAAGATT TACGCGACGA GAGCTTAAAA GGCTTAGTCG AAATTGGTTT CGACGGTTAT GCCGTCGGTG GTTTGGCCGT AGGTGAGCCT AAGGAAGACA TGCACCGCAT TCTTGAGCAT GTCTGTCCAC AAATTCCTGC GGACAAGCCT CGCTATCTGA TGGGGGTCGG TAAGCCAGAG GATTTAGTTG AAGGTGTGCG TCGTGGTATC GACATGTTTG ACTGTGTGAT GCCAACCCGT AACGCCCGCA ACGGTCATCT GTTTACCAGT GAAGGTGTGA TCAAGATCCG CAATGCGCGT CATCGTGATG ACACTTCACC GCTCGATCCT AAGTGTGATT GTTATACCTG TAAAAACTAT TCACGGGCAT ACCTTTACCA TTTAGATCGT TGTAATGAGA TTCTGGGTGC GCGTTTAAAC ACCATTCACA ACTTGAGATA CTATCAAATG TTAATGGAAG GTTTGCGCGG GGCGATTGAG ACGGGTACAT TAGACGCCTT TGTAAAGGAC TTCTATACCA GTCAAGGTCG TGAAGTTCCA GAGTTAGTCG ATTGA
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Protein sequence | MKFELDTTDG RARRGRLIFE RGTVETPAFM PVGTYGTVKG MTPEEVRATG ADILLGNTFH LWLRPGEEIM RKHGDLHDFM NWQRPILTDS GGFQVFSLGD IRKITEEGVH FRSPINGEKI FLDPEKSMQI QHALGSDVVM IFDECTPYPA TEDEARKSMQ MSLRWAKRSR DEFDRLENPN SLFGIIQGSV YEDLRDESLK GLVEIGFDGY AVGGLAVGEP KEDMHRILEH VCPQIPADKP RYLMGVGKPE DLVEGVRRGI DMFDCVMPTR NARNGHLFTS EGVIKIRNAR HRDDTSPLDP KCDCYTCKNY SRAYLYHLDR CNEILGARLN TIHNLRYYQM LMEGLRGAIE TGTLDAFVKD FYTSQGREVP ELVD
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