| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1363 |
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| Symbol | |
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| ID | 4251382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 1585890 |
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| End bp | 1586912 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638117947 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_733498 |
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| Protein GI | 113969705 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0333306 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0498626 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTGA ATCAACAGAT GGGTATTACA CGTCCATTGA AAACCGTCGC AAAAATGCTG
GCACTGGCCT CAGTGTTTGC GACCAGCTTT AACGTGTTTG CGGCGCCCGT TGAAATCAAG
TTCTCCCACG TGGTTGCTGA AAACACGCCA AAGGGTCAAA TGGCGTTGAA GTTTAAAGAA
TTAGTTGAAC AACGTTTACC TGGTGAATAT ACGGTCAGTG TATTCCCTAA CTCACAGTTA
TTTGGGGATA ACAACGAGTT AGCGGCACTT CTGTTAAACG ACGTGCAATT TGTAGCGCCT
TCTCTTTCTA AATTTGAGCG TTACACTAAG CGCCTACAGG TTTTCGACCT GCCATTCCTG
TTCAATGACA TGGATGCAGT AAACCGTTTC CAACAAGGTG AAGCCGGCCA AGCCCTGCTG
AACTCAATGA GCCGTAAAGG GATTGTGGGT TTAGGTTATC TGCACAATGG TATGAAGCAG
TTCTCTGCTA ACACTCCACT CAAACAACCT TCTGATGCTA AAGGCTTAAA ATTCCGCGTG
ATGGCATCTG ACGTATTGGC TGCCCAGTTT GATGCAGTTG GCGCCATCCC AGTGAAAAAA
CCTTTCTCTG AAGTGTTCAC TCTGCTGCAA ACCCGTGCGA TCGACGGTCA AGAAAATACT
TGGTCAAACA CCTACTCACA AAAATTCTAT GAAGTTCAAA GCCAGATTAC TGAAAGTAAC
CACGGCGTTC TGGACTACAT GGTCGTGACC TCTGACGCCT TCTGGAAAGG CTTACCCGCG
GATAAACGTA AAGTGATCAA AGAAGCGTTA GATGAGTCTA TCGCCTTAGG TAACAAGATC
GCTGCTGAAA AAGATAACGA AGACAAGCAA TTAATCCTTG ATTCTAAACG TTCTCAACTG
GTGACCTTAA CACCAGAAGA ACGTCAAAAA TGGATTGATG TAATGAAACC TGTTTGGGCG
AAATTTGAAG ACCAAGTAGG TAAAGATGTG ATTGAAGCCG CTGTTGCTGC AAATAAACAA
TAA
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| Protein sequence | MTLNQQMGIT RPLKTVAKML ALASVFATSF NVFAAPVEIK FSHVVAENTP KGQMALKFKE
LVEQRLPGEY TVSVFPNSQL FGDNNELAAL LLNDVQFVAP SLSKFERYTK RLQVFDLPFL
FNDMDAVNRF QQGEAGQALL NSMSRKGIVG LGYLHNGMKQ FSANTPLKQP SDAKGLKFRV
MASDVLAAQF DAVGAIPVKK PFSEVFTLLQ TRAIDGQENT WSNTYSQKFY EVQSQITESN
HGVLDYMVVT SDAFWKGLPA DKRKVIKEAL DESIALGNKI AAEKDNEDKQ LILDSKRSQL
VTLTPEERQK WIDVMKPVWA KFEDQVGKDV IEAAVAANKQ
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