| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1360 |
|---|
| Symbol | |
|---|
| ID | 4251379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 1581875 |
|---|
| End bp | 1583686 |
|---|
| Gene Length | 1812 bp |
|---|
| Protein Length | 603 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638117944 |
|---|
| Product | periplasmic sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_733495 |
|---|
| Protein GI | 113969702 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.062671 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCCCA TGACGCCCAA GGCCAAACAA CGTCTTTTAA TGACCATAGT GTTACTTGCG
GGCTTATTTG CCATCTTAAA ATTAACCTAC TGGGTGCACT TTTATCAGGG CAAAATTGAA
ATCCAACAGC AATCAGAAAA ACAACTCAAA GAGCTGGTCA GCTTCCTCGA TGGCGCGCTG
TCGCGTTACG AGAGTATCCC CCATGTTTTG TCGACCAACC CCATGCTCGC CAATGTGCTT
AACGATCAAC AAAACCCCAA GAAAGTACAA GAACTTAACC TGTACTTGGA AGAAATTCAG
CATGTGACTG AGGCATCCGA TATTTATCTT ATCGACGCCC TCGGTATTGC CATTGCCGCC
AGCAACTGGC AACAGAGCTT TTCGTTTATC GGCAAAGACT ATTCCTTCAG ACCCTATTAC
ACCGACGCGA TTTCAGGCAA TTTGGGCCGC TACTATGCGG TGGGCACCAG TTCGGATAAA
CGCGGCTTTT ACTTTTCTTA CCCCATTTAT CAACAAGGCG CGAAGGGCAT TCTGGGCGCC
ATTATTGTGA AAGTGGATAT CGCCGATATC GAGCAGCAAA GCACCAGTAT TGCGATAGCG
GGCCAGTATC AATTCCTCAT CAGCGACCCC GACGATATTG TGTTTATCTC CAGTGTCGAT
GAATGGCGCT TAGCCTCGCT TACGCCGCTG ACTCAGGCGA AACAATATGC CTTAAACGCC
TCGAAACGTT ACGCCGAGCG GCCGATTGGT GAATTACTGA TTAAACCCCA ATACCAAGAA
GACAGCCTGA GTAATGGCCA TATCTATCAA ATTCGCTCCG GCAACAGCCA AGCGCAATAC
ATGGATACCC ATCACTTAAT GACCAAAGCA GGCTGGCGAG TGCACATTCT GGCGCCGATG
AAACCTTTGC TCGAGTCTAT GCCCGCGCTT ATGCTGTTAT CGGCCTCCAT CTATTTACTG
CTTGCCTTAG GCTTACTCTT TAGTAGCGAG CGGCGTCGCA ACCTACAGCG AATGCAACTT
GCCCAGAGTT TATTAGAACA AAGGGTGGAA GAGCGCACCC AAGATCTGCA GCAGGCCAAT
AATCGTCTCA AAGACACTCA GGATGAACTC ATTCAAGCGG CTAAGTTGAC CGTGATAGGT
AGCCTATCCG CCAGTATCAA CCATGAGCTG AATCAACCCT TAGCCGCCCT TCGCAGCTAC
GCACAAAATA CCCAAACCTT CCTCGCCCGC AATATGCCGG ATAAAGCCTC TGATAATCTT
AAAATTATTA TCGAGCTGAC CGACCGATTA GCCGATATTG TCGGCCAATT TAAGAGTTTT
ACCCGCAAGA GCCAAGGCAA TGACAGTGCC ACCGACCTCA AAGGCTGTAT CAAGCAAGCC
CTGACCATAG TCCAGCCCGA AATCGACAAA CAAGGGGTTG AACTCGATGT GCTGCTCCCC
GAAGGCCAAT ATCAGGTCTG GGGGGATAAG GTGAGGTTGC AACAAGTGTT TGTGAATATT
ATGAGCAATG CGATTGTTGC CATGCAGCAA TCCTCAAAAC GAACACTGAG TATTAGGGTA
AACTGTCAGG ACAAGTTCTG TATCAGTATT CAGGACTCGG GCCCAGGGGT GCGCGAGAGC
CAAATGGAGA AGATTTTTGA GCCCTATTTC ACCACCAGTG AACGTACAGG GCTTGGACTC
GGGTTATCCA TTTCCCAGCG CATTATCGAG TCCATGCAGG GGCAAATTAA TGTTGCCAAT
GCCGAGGACG GCGGCGCCAT TTTCCACATT ATTTTACCGA TTTATTTAGC CGAGGAACGT
CAGTCATCAT GA
|
|---|
| Protein sequence | MLPMTPKAKQ RLLMTIVLLA GLFAILKLTY WVHFYQGKIE IQQQSEKQLK ELVSFLDGAL
SRYESIPHVL STNPMLANVL NDQQNPKKVQ ELNLYLEEIQ HVTEASDIYL IDALGIAIAA
SNWQQSFSFI GKDYSFRPYY TDAISGNLGR YYAVGTSSDK RGFYFSYPIY QQGAKGILGA
IIVKVDIADI EQQSTSIAIA GQYQFLISDP DDIVFISSVD EWRLASLTPL TQAKQYALNA
SKRYAERPIG ELLIKPQYQE DSLSNGHIYQ IRSGNSQAQY MDTHHLMTKA GWRVHILAPM
KPLLESMPAL MLLSASIYLL LALGLLFSSE RRRNLQRMQL AQSLLEQRVE ERTQDLQQAN
NRLKDTQDEL IQAAKLTVIG SLSASINHEL NQPLAALRSY AQNTQTFLAR NMPDKASDNL
KIIIELTDRL ADIVGQFKSF TRKSQGNDSA TDLKGCIKQA LTIVQPEIDK QGVELDVLLP
EGQYQVWGDK VRLQQVFVNI MSNAIVAMQQ SSKRTLSIRV NCQDKFCISI QDSGPGVRES
QMEKIFEPYF TTSERTGLGL GLSISQRIIE SMQGQINVAN AEDGGAIFHI ILPIYLAEER
QSS
|
|---|
| |