| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1339 |
|---|
| Symbol | |
|---|
| ID | 4251358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1552172 |
|---|
| End bp | 1552714 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638117923 |
|---|
| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| Protein accession | YP_733474 |
|---|
| Protein GI | 113969681 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.875167 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00272192 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTGCA TTGAAACCGA GCTTGCAGAA GTATTGGTGT TCGAACCGCA AGTATTTGGT
GATGAACGCG GTTTTTTTAT GGAAACATTT CGGCAGTCGT ATTTCACTGA ATGTTTTCAA
AGTCGAGGAT TAAAGGCGCC TGAGTTGGTG CAAGATAATT ACAGTCGCTC ACAACAACAC
GTATTACGTG GCTTGCACTA CCAATGCAAG CATCCGCAGG GCAAATTAGT CCGTGTTTGT
GCAGGCAGTA TTTTTGATGT CGCTGTGGAT ATTCGGCCGC AATCAGAAAC CTATGGTAAA
TGGGTAGGGC GTGTGCTTTC TGCTGATAAC CATTTGCAAA TGTGGATCCC GCCTGGCTTT
GCCCATGGTT TTTATGTGCT GAGTGAATAT GCCGATGTGA TTTATCGCTG CACTGATTAT
TACGCGCCAG ATGATGAATA TGTGCTGGCA TGGAATAGTG CTGAGTTTGC AATTGACTGG
CCGTTACGCA ACGAACCACC AATACTTTCG GAGAGGGATG CAAAAGCCGC CGTGAGTACC
TAG
|
|---|
| Protein sequence | MKCIETELAE VLVFEPQVFG DERGFFMETF RQSYFTECFQ SRGLKAPELV QDNYSRSQQH
VLRGLHYQCK HPQGKLVRVC AGSIFDVAVD IRPQSETYGK WVGRVLSADN HLQMWIPPGF
AHGFYVLSEY ADVIYRCTDY YAPDDEYVLA WNSAEFAIDW PLRNEPPILS ERDAKAAVST
|
|---|
| |