Gene Shewmr4_1320 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1320 
Symbol 
ID4251340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1529773 
End bp1531200 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content44% 
IMG OID638117905 
Productpolysaccharide biosynthesis protein 
Protein accessionYP_733456 
Protein GI113969663 
COG category[R] General function prediction only 
COG ID[COG2244] Membrane protein involved in the export of O-antigen and teichoic acid 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0368639 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGATC TTGCGAGTAA AACTAAAAAA GGTCTGCAAT GGAGCGCCTT GGAACGATTT 
TTAACCCAAG GTATTCAACT CGCAATTACC TTATATTTGG CAAGATTATT AGGGCCAACT
GCTTTTGGCT TAGTGGGCAT GCTGGCAGTG TTCATTGCCA TTGCTAATGT ATTTGTCGAT
AGTGGTTTTA CTTCGGCGTT AATTCGTAAA ACAGATCGCA CAGAAAGTGA CTTAGTAACC
GCCTTTTATT ACAACATTGT CATGGCGGGT TTGTGCTACT TTGCTTTGTA TATCAGCGCG
CCTTTGGTTG CCGATTTTTA TCAACAAGCC GAGCTGCAAA CCCTGCTGCG GATATTGGGC
TTAGTTGTGC TGATCAACGC ATTTACGTTA ATTCCGCGCG TTAAGCTTAA TGTGGTGATG
GATTTTAAAA CCCAAGCCAA AATATCGGTA CTCAGTGTGC TGATCAGTGG GTCAGCAGCG
ATAATATTAG CAACTAACGG CTATGGCGTA TGGGCGTTGG TGACGCAAAC CTTGCTCAAT
GCCAGCTGTG CTACCTTTTT ATTCAATCTG TTTGCTCCTT GGTTACCGCG TGGCCGCATT
ACTAAGCACG CTTTTAATTA TCTGTTTGGT TATGGTAGTA AATTGTTGTT ATCTGGCTTA
TTGGATGTTA TCTACAACAA TCTGTATCAA ATCATTATTG GCAAAAAATT TAGCCCTGCC
GTGGTGGGGC AATTTACTCA AGCCAATCAA TTAGCCAGTG TGCCTGTGTC GACGCTTACG
GGCATCATTC AGCGCGTTAC TTTCCCGCTG TTTAGCCAGT TACAAGACGA TCCAGATAAA
ATGGCAAACG CCTATCGCCA AACCTTAAAA TTGTCGGCGC TAGTGATCTT CCCGTTGATT
GTTGCGTTAG GGTTGATTGC CAAGCCGTTG TTTACCAGCC TATTAGGCGA GCAGTGGCAG
GGGGCCGCAG CGCTGCTTAG TGTGCTGTGT TTGGGCTATA TGTTATACCC GATCCATTCT
ATTAATTTGA ATTTGTTGCA AGTCACTGGC CGCAGTGATC TGTTTTTAAA GCTTGAGGTG
ATGAAAAAAG TTATTGGCGT GACTGTGCTG CTGTTGAGCA TTCCTTATGG TGTGCTGGCG
ATGTGCCTCG GTTTTACCCT GACTTCCTAT TTAGCTTTGC TACTTAACAC CTATTACACA
GCTAAGTTAA CGCATTTAAG CCAATGGCAA CAATGTAAAG ATATTTTACC TATTTGGCTT
GCGGTGATTT TTGCTGCTGC CGTTGGATAT GGCGCCGGTT TATATTTTCT ACAATCCTGG
TTGCAAATAG CGGTTAACTT GAGCGTAGCC TTATTGATGT ATGGCATGTA TTTAGTATTG
GCACAAAAGC CACTGCTGTT GCAACTGCGC AGTATCTTGC GCCGCTAG
 
Protein sequence
MIDLASKTKK GLQWSALERF LTQGIQLAIT LYLARLLGPT AFGLVGMLAV FIAIANVFVD 
SGFTSALIRK TDRTESDLVT AFYYNIVMAG LCYFALYISA PLVADFYQQA ELQTLLRILG
LVVLINAFTL IPRVKLNVVM DFKTQAKISV LSVLISGSAA IILATNGYGV WALVTQTLLN
ASCATFLFNL FAPWLPRGRI TKHAFNYLFG YGSKLLLSGL LDVIYNNLYQ IIIGKKFSPA
VVGQFTQANQ LASVPVSTLT GIIQRVTFPL FSQLQDDPDK MANAYRQTLK LSALVIFPLI
VALGLIAKPL FTSLLGEQWQ GAAALLSVLC LGYMLYPIHS INLNLLQVTG RSDLFLKLEV
MKKVIGVTVL LLSIPYGVLA MCLGFTLTSY LALLLNTYYT AKLTHLSQWQ QCKDILPIWL
AVIFAAAVGY GAGLYFLQSW LQIAVNLSVA LLMYGMYLVL AQKPLLLQLR SILRR