| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1302 |
|---|
| Symbol | |
|---|
| ID | 4251322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1508460 |
|---|
| End bp | 1510742 |
|---|
| Gene Length | 2283 bp |
|---|
| Protein Length | 760 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638117887 |
|---|
| Product | CheA signal transduction histidine kinases |
|---|
| Protein accession | YP_733438 |
|---|
| Protein GI | 113969645 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.345231 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTTTG ATGTAGATGA AGAGATACTC CAGGACTTTT TAATTGAAGC GGGCGAAATT
CTTGAGTTGC TGCAAGAGCA GCTGGTCGCG CTTGAAAACA ATCCTGATGA TACTAACTTG
CTAAATGCCA TTTTCAGGGG GTTTCATACT GTAAAGGGCG GTGCGGGTTT CCTTAGTCTC
ACTCCCATGG TGGATGTCTG TCACGAAGCA GAAAACACCT TCGATTTATT ACGCACAGGC
AAGCGCAGTG TCTCCGCCGA GTTAATGGAC ATCATTCTTC AAGCTGTCGA TGCGATTAAC
ACTATGTTTG CTCAAACCCA ACAAGGCGAG CAACAAGATC CCGCCGATCC TGCATTATTG
GCTAAATTAA AAATGCTGAG CTCCGGTGAG CCGCTTCCTT CCGAATCAGG CCAAAGTCAT
GCCGAAGCTG AGTCACTGCC TGAACCAGAA CCTGTTATAG AAACTGTGGT TGAAGTCGCC
GCAGTTGAAG AAATGCCGAT TGAGAAGTCA GAGCTATCAG ATTCCAGTAT TGATGAAATC
GATGAAGCGG AGTTTGAAGC ATTACTCGAT GCACTGCACG GCGCCGGAAA AGGCCCCGGA
GTTTCTGCGC CACAAGCAGA TGCTGCCCCT GCGGTGCAAA ATGTCAGCAA ACCTCAAGCG
ACATCCGCAA GCGCTAGCGA TGATATTACC GATGACGAGT TTGAAGCGCT GCTCGATGAG
CTGCACGGTT CTGGCAAGTT TAAAGGTAAA GTGGAAGAGC CTGCCAAGCC AAAAGTTGAA
GCAGTTGTCG CTGCACCAAA GCCTGCCGCT CCAGCTGTTG ATTCGGACGA AATCACTGAA
GATGAGTTTG AGCGTCTCCT CGATGAATTA CACGGTAAAG GCGGTGCACC TGCAAAAGTG
ACTGCGAAAG CCGAATCTGC TCCAGCTAAA ACCGAGCCCG CTAAAGCGCC TCCAAGTGCC
GTCGCGCCTT CAACGCCTGC CGCTCCTAAA GCCAGTGTTG CTGCACCAGC AACACCTCCT
GCGGTAAAAG CCAAAACTGA TGTGGCGGTT GCTGAAAAAG CCCCTGCTAA AGCAGCGGCA
GCAGCCTCTG CTAACGTACC TCAAGGCGAG ACAACTGTTC GCGTCGATAC CGCGAGACTC
GACCAAATCA TGAACATGGT CGGTGAGTTA GTGTTAGTGC GTAACCGCTT ATTGAGTTTA
GGCATTAGTC GTGATGACGA AGAAATGTCT AAGGCGCTAG CGAATTTAGA CTTGGTGACA
GCAGATTTGC AGGGCGCTGT GATGAAAACG CGCATGCAAC CCATCAAGAA AGTCTTTGGT
CGCTTCCCTC GGGTTGTACG CGATTTAGCT CGTACTCTGA ATAAAGAAAT TGATTTAGTC
CTCGTGGGCG AAGAGACCGA CCTCGATAAA AACTTAGTTG AGGCGCTCGC TGATCCGTTA
GTGCACTTAG TGCGAAACTC GGTAGATCAT GGCATTGAGA TGCCTAATGA CCGTGAGGCC
AGCGGCAAAC CAAGAACAGG CACCATCACT CTGTCTGCAA GCCAAGAGGG TGACCATATC
CTGCTGAAAA TCGAAGACGA TGGCGCGGGT ATGGATCCTG AAAAGTTAAA GCAAATTGCC
ATCAAGCGTG GGGTACTCGA TGAGGATACC GCGGCGCGGA TGACTGACAG TGAAGCTTAT
AACCTGATTT TTGCGCCTGG CTTCTCGACG AAAGTGGAGA TTTCAGATAT TTCCGGCCGT
GGTGTTGGGA TGGACGTGGT GAAAACCCGT ATTACCCAAC TTAACGGAAC CGTGCATATC
GACTCGATGA AAGGCAAAGG CACCATACTT GAGATTAAAG TGCCGCTGAC CTTGGCGATT
ATGCCGACCT TAATGGTAGA CGTTGCCAAG CAGGTGTTTG CATTGCCCTT ATCCAGTGTG
AATGAGATTT TCCATCTCGA TCTCACCAAG ACCAATATTG TCGATGGACA ACTCACTGTG
ATTGTCCGCA ACAAGGCCGT ACCGCTTTTC TATCTGGAGC AGTGGTTACA TCGCAATAGA
ACCAGCTTTA AACATGGTGA CAAGAAACAC GGCCATGTGG TGATTGTACA ACTGGGGATG
ATGCAAATTG GTTTTGTTGT TGATGCTTTA ATTGGACAAG AAGAAGTGGT GATTAAACCC
TTGGGAGCAT TGTTGCATGG CACGCCGGGT ATGGCGGGGG CGACAATCAC ATCCGACGGT
GGCATTGCCC TCATCTTGGA TGTCCCAGGA TTATTAAAGC ACTATGCGAA AAATAAAAGT
TAG
|
|---|
| Protein sequence | MAFDVDEEIL QDFLIEAGEI LELLQEQLVA LENNPDDTNL LNAIFRGFHT VKGGAGFLSL
TPMVDVCHEA ENTFDLLRTG KRSVSAELMD IILQAVDAIN TMFAQTQQGE QQDPADPALL
AKLKMLSSGE PLPSESGQSH AEAESLPEPE PVIETVVEVA AVEEMPIEKS ELSDSSIDEI
DEAEFEALLD ALHGAGKGPG VSAPQADAAP AVQNVSKPQA TSASASDDIT DDEFEALLDE
LHGSGKFKGK VEEPAKPKVE AVVAAPKPAA PAVDSDEITE DEFERLLDEL HGKGGAPAKV
TAKAESAPAK TEPAKAPPSA VAPSTPAAPK ASVAAPATPP AVKAKTDVAV AEKAPAKAAA
AASANVPQGE TTVRVDTARL DQIMNMVGEL VLVRNRLLSL GISRDDEEMS KALANLDLVT
ADLQGAVMKT RMQPIKKVFG RFPRVVRDLA RTLNKEIDLV LVGEETDLDK NLVEALADPL
VHLVRNSVDH GIEMPNDREA SGKPRTGTIT LSASQEGDHI LLKIEDDGAG MDPEKLKQIA
IKRGVLDEDT AARMTDSEAY NLIFAPGFST KVEISDISGR GVGMDVVKTR ITQLNGTVHI
DSMKGKGTIL EIKVPLTLAI MPTLMVDVAK QVFALPLSSV NEIFHLDLTK TNIVDGQLTV
IVRNKAVPLF YLEQWLHRNR TSFKHGDKKH GHVVIVQLGM MQIGFVVDAL IGQEEVVIKP
LGALLHGTPG MAGATITSDG GIALILDVPG LLKHYAKNKS
|
|---|
| |