Gene Shewmr4_1281 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1281 
Symbol 
ID4251214 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1488862 
End bp1489200 
Gene Length339 bp 
Protein Length112 aa 
Translation table11 
GC content46% 
IMG OID638117866 
Productflagellar hook-basal body complex subunit FliE 
Protein accessionYP_733417 
Protein GI113969624 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1677] Flagellar hook-basal body protein 
TIGRFAM ID[TIGR00205] flagellar hook-basal body complex protein FliE 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAATTG GCACAAATTC ATTACTGCAA GAAATGCAGT CACTTAAAGG TGAAATCGCA 
CCTTCTTTTG GGATTTCACC CAATAACATT GTGCAGCAAG TGAATAACAC CAGCGGTGCT
GACTTTGGAC AACTCCTCTC CCAAGCCATT GGCAATGTCA GTGGTTTGCA GTCAACCTCA
TCGAATCTCG CGACCCGACT CGAAATGGGT GACACGACAG TGAGCCTTTC TGATACTGTT
ATCGCCCGCG AAAAGGCCAG TGTCGCCTTT GAAGCCACTG TCCAAGTGCG CAATAAGCTC
GTTGAAGCTT ATAAAGAAAT AATGAGCATG CCTGTTTAG
 
Protein sequence
MQIGTNSLLQ EMQSLKGEIA PSFGISPNNI VQQVNNTSGA DFGQLLSQAI GNVSGLQSTS 
SNLATRLEMG DTTVSLSDTV IAREKASVAF EATVQVRNKL VEAYKEIMSM PV