| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1228 |
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| Symbol | ispG |
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| ID | 4251284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1427875 |
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| End bp | 1428990 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638117813 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_733365 |
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| Protein GI | 113969572 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0910964 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATAACG AAACACCCAT AAAGAGACGT CCTTCAACCC GCATTTATGT GGGCAATGTG
CCAATTGGTG ATGGTGCGCC GATTGCCGTA CAGTCGATGA CTAACACTAA GACCACAGAT
GTTGAGGCAA CCGTTGCCCA AATCCGTGCC CTAGAAAAAG TGGGTGCCGA TATAGTGCGT
GTCTCAGTGC CGACGATGGA CGCCGCCGAA GCCTTTAAAG TGATTAAGCA ATCGGTGTCA
GTGCCCTTGG TTGCCGATAT CCACTTCGAT TACCGTATCG CCCTGAAAGT GGCCGAATAT
GGTGTGGACT GTTTGCGTAT CAACCCTGGC AATATTGGTA ACGAAGAGCG TATCCGCAGT
GTGGTGGAGT GCGCCCGCGA TAAAAACATT CCTATCCGTA TTGGAGTGAA CGGCGGTTCA
TTAGAAAAAG ATCTGATGGA CAAATACAAA GAGCCTACGC CGGAAGCCTT GCTCGAATCG
GCTATGCGCC ATGTGGACAT TCTTGACCGT TTGAACTTCG ACCAATTTAA GGTCAGCGTA
AAAGCCTCCG ATGTGTTCTT GGCGGTAGAA TCCTATCGAT TATTGGCTAA GCAAATTCGC
CAGCCATTGC ATTTAGGTAT TACCGAAGCG GGTGGCGCCC GTGCCGGTGC GGTCAAATCA
GCCGTCGGCT TAGGCATGCT GCTTGCCGAA GGCATTGGTG ATACGCTGCG TATTTCGTTA
GCGGCCGATC CGGTGGAAGA AATCAAAGTT GGCTTTGATA TCCTAAAGTC ACTGCGGATC
CGTAGCCGTG GCATTAACTT TATTGCGTGT CCTTCTTGCT CGCGCCAAGA GTTCGATGTG
ATTAGCACGG TAAATGAATT AGAGCGCCGC CTCGAAGATG TGACGACCGC GATGGATGTG
TCTATCATCG GCTGTGTGGT CAATGGCCCT GGCGAAGCCT TAGTGTCTCA CATCGGCTTA
ACCGGTGGAC ATCGTAAGAG TGGTTACTAC GATGAAGGTG AGCGTCAAAA AGAGCGTTTC
GACAATGATA ACTTAGTCGA TTCCCTCGAA GCGAAAATTC GCGCTAAGGC GAGCCAAATG
GCTAACCGCA TCCAAGTGAA AGACACGACT GAGTAA
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| Protein sequence | MYNETPIKRR PSTRIYVGNV PIGDGAPIAV QSMTNTKTTD VEATVAQIRA LEKVGADIVR
VSVPTMDAAE AFKVIKQSVS VPLVADIHFD YRIALKVAEY GVDCLRINPG NIGNEERIRS
VVECARDKNI PIRIGVNGGS LEKDLMDKYK EPTPEALLES AMRHVDILDR LNFDQFKVSV
KASDVFLAVE SYRLLAKQIR QPLHLGITEA GGARAGAVKS AVGLGMLLAE GIGDTLRISL
AADPVEEIKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV ISTVNELERR LEDVTTAMDV
SIIGCVVNGP GEALVSHIGL TGGHRKSGYY DEGERQKERF DNDNLVDSLE AKIRAKASQM
ANRIQVKDTT E
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