| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1226 |
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| Symbol | |
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| ID | 4251265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1425905 |
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| End bp | 1426693 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638117811 |
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| Product | type IV pilus biogenesis/stability protein PilW |
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| Protein accession | YP_733363 |
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| Protein GI | 113969570 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0380935 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCATG GATTGTCAGG GTTTTCATTA GCAATTGCCC TGTCATTATT AGTGACAGGA
TGCGTAACTG AGCGTACCTA TACAGGGACA GATATTCCGG TGTCGGAGCG GAAACTCGAT
AAAGTTGCCG CCGCACGGGA ACGTATGCAG CTCGGTTTAA CTTACCTTAA TCGAGGTAAC
TCGGAACAAG CCAAGTACAA TCTTGATAAA GCAATCGAAT ATGCGCCAGA GCTCGAAGAT
GTGCATGTGG CTATGGCCTA TTACTATCAG ACTGTTGGCG ATTTAGTGCG TACCGAACAG
GCGTATCAAG ACGCTATCAA TACCAAGGAC GCCTCTGGCG ATTCCATGAA TAACTTTGGG
GTGTTTTTGT GCCAACAAAA GCAATATGAC AAAGCTGAAA AGATGTTTTT AGCAGCAATA
GAAATGCCCA AATATACGCG TACCGCCTCC AGTTATGAGA ACTTAGGCAT TTGTAGCCGA
GACGCGGGAC AAACAGAAAA GGCACGACAG TATTTTCAGA TGGCGTTAAA GTATGACCCG
AGACGCTCGG TGTCTTTACT GGAGCTGGCT GAGCTTGGGT TGGATAAAGG TGATTATGTC
GATGCGCAAA ACCAATTAGC GCGCTATCAC CAAGTGGCAG CCCAGACTCC AGAAAGTTTA
ACGCTCGGAA TAAAAATTGA GCAGGCGTTG AATGATGATG CTGCTATGAA GCGATTTGGC
ATTTTATTAC TCGCCAAATT CCCAGCATCG CCTCAAGCCA AGCAATACAG AGTTAATTTG
CATCAATGA
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| Protein sequence | MKHGLSGFSL AIALSLLVTG CVTERTYTGT DIPVSERKLD KVAAARERMQ LGLTYLNRGN
SEQAKYNLDK AIEYAPELED VHVAMAYYYQ TVGDLVRTEQ AYQDAINTKD ASGDSMNNFG
VFLCQQKQYD KAEKMFLAAI EMPKYTRTAS SYENLGICSR DAGQTEKARQ YFQMALKYDP
RRSVSLLELA ELGLDKGDYV DAQNQLARYH QVAAQTPESL TLGIKIEQAL NDDAAMKRFG
ILLLAKFPAS PQAKQYRVNL HQ
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