Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1212 |
Symbol | |
ID | 4251251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1413003 |
End bp | 1414496 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638117797 |
Product | extracellular solute-binding protein |
Protein accession | YP_733349 |
Protein GI | 113969556 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTACTTA TTAGCATGTT AACACTTGTA TCCGAGGGGT TATTCTTGTT AAAACCTTTG TCACTCTTAC TTGTCGGACT GGGTTTCACG CTAGCAGCAC CTGCCTTAGC GGAATTTTCC TTGGCACAAA TTCCCCCCCT CACGAACAAA ACGCCCATCA CCTTAGTCGC CGAAAAAGGC TTTTGGACTG ACTACCTAAC GCAGGAAATG TTACCCAAGT TCACCGAAAA AACCGGCGTT AAAGTCAATG TGGTCAGTAC CGAGCTGGAA GGCATGTTCG AACTACAGAC CCATGCATTG CTGCAAGGCG AAGGAAAATA TGATCTGCTA ACCATGGAAG CCGGCTGGGC AAAAGAGTGG GCCGCCAATG GCTATACCGT CCCCCTATTA GAACTCGCAA AACTCTACGA TCCCGACGGT GAAAAAGCGA TGGAAAGCTA TCTCGAACCA TATTACCCAT CCTTGCTGAA TATTTTGTCC TATCACGGTG AGTTACACGC TATTCCCTAC AATAACTATG TGATGGGGAG TCATTACCGC GCGGATTTAT TTGAGAATAA AACCGAACAA GCTCAGTTTC AGCAACGCTT TGGTTACCCA CTCAAACCCG CGACTAATTT CGATGAACTA CAGGACCAAG CGGTATTTTT TACCCGAAAA GCAGGCGAAC TGCTTGCGGG CAAGCCCTTA AGCCACGACT TTTATGGCTT GGCATTAATG TCTGGCAACA AGCCCCATAT TAACGATGAA TTTTCGAGCA TCATTTGGAG CTTAGGGGGC GCTTGGATGT GGCCCGTCTA TAATCCGCAA AAGCAGATCA CCCACTTCGA AGTGCCCGCA GTCAACCAAG AGGCGATAAA GGCAAGCGCT ATCTATCGAA AACTAATGCC TTACGCCATT CCGGCGGATG ATAAATTTGC CTTCAATGAA GCGGCCAATG CACTGGCAAG CGGACAAGTG GCGATTTGGC CCTTTGCCTA CAACAATCTC TGGTCGGTCT CCTTTAAAGT CGAGGCCAAT GTGCCAGGCG CTCGGCTTGG CGTGGCTCAA GTGCCTGGCG GCATGCCCTA TAACGGTGCC TACGCTTTTG CCGTGAGCTA CGACAGTAAA AATCCGCAAG CCGCCTATTG GTTACTCAAA TACATGGGCA CCTATGAAGC CCAATATGCC TACGCCCTCG GCGGCGGCAA TCCCTGCAGA ATGGATGTGG TCACAGCGCC AGAATTTAAA CAAGCCTCTA AGAGATCCAT TGCTGGCGCC TTTGAGGCGA GCCAAATTGC TAACTTATTT TGGTCTACTA AAGTATTGGA AGTAGGACAC TTTACCACTA CCGCTATGGG GCAGATTTAT CCCGAATTAA GTCATGCTTG TTATGCAGCA AGCCGACACG AAGCCAACAG TACCGATATT TTTATTGAGT TAAGCAGCAA AATTAAACAC CTGCAGAATA CCTATGGGGA AGTGCCTGCA ATTGATAAGA AAAATAACCA ATGA
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Protein sequence | MLLISMLTLV SEGLFLLKPL SLLLVGLGFT LAAPALAEFS LAQIPPLTNK TPITLVAEKG FWTDYLTQEM LPKFTEKTGV KVNVVSTELE GMFELQTHAL LQGEGKYDLL TMEAGWAKEW AANGYTVPLL ELAKLYDPDG EKAMESYLEP YYPSLLNILS YHGELHAIPY NNYVMGSHYR ADLFENKTEQ AQFQQRFGYP LKPATNFDEL QDQAVFFTRK AGELLAGKPL SHDFYGLALM SGNKPHINDE FSSIIWSLGG AWMWPVYNPQ KQITHFEVPA VNQEAIKASA IYRKLMPYAI PADDKFAFNE AANALASGQV AIWPFAYNNL WSVSFKVEAN VPGARLGVAQ VPGGMPYNGA YAFAVSYDSK NPQAAYWLLK YMGTYEAQYA YALGGGNPCR MDVVTAPEFK QASKRSIAGA FEASQIANLF WSTKVLEVGH FTTTAMGQIY PELSHACYAA SRHEANSTDI FIELSSKIKH LQNTYGEVPA IDKKNNQ
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