| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1195 |
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| Symbol | |
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| ID | 4251234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1398082 |
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| End bp | 1399194 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638117780 |
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| Product | twitching motility protein |
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| Protein accession | YP_733332 |
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| Protein GI | 113969539 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0633873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGTCC GTCCGTTTTT AAAAGTCATG GTGGAGCGTA AAGCCTCGGA CTTGTTTATT
ACCGCAGGTT TTCCGCCTAG CGCCAAAATC GATGGTGAGT TACGTCCGTT AGCCGAGAGT
GCCTTCACGC CCGCGCAATC TTTGGATTTT GTCGAGTCCG TGATGACCGA GGCACAAAAG
AAGGAGTTTC ACACGACTCG CGAGTGTAAC TTTGCTTTTG CGGTTAAGGA TTTAGGTCGT
TTCCGCGTCA GCGCATTCTG GCAGCGTGAA TCTCCTGGAT GCGTAATGCG CCGGATTGAG
ACCAAGATCC CTGAGGTAGA AGACTTAAAA CTGCCACCGA TTTTAAAAGA TCTGGTGATG
AGTAAACGGG GTCTTATCAT CATGGTTGGG GGAACGGGAA CCGGTAAGTC GACCTCCTTG
GCGGCGTTAG TGGGTTATCG TAATGCCCAT GCCCGTGGTC ATATCCTCAC CATCGAAGAC
CCGGTGGAAT TTGTGCACGA CCATCGCAAA AGCATCATCA CTCAACGTGA AGTGGGTATA
GATACAGAAT CCTTTGATGC GGCGCTGAAG AGTTCGCTGC GTCAGGCGCC CGATGTGATT
TTGATTGGTG AGATCCGTAC TCAAGAAACC ATGGAGTTTG CGCTTTCTTT CGCCGAAACG
GGTCACCTCT GTATGGCGAC ACTGCACGCG AACAACGCTA ACCAAGCGTT AGATCGGATC
ATGCACTTAG TGCCAGAGAG TAAACACCAG CAGTTGTTAT TCGACTTGTC ACTCAACCTG
CGCGGCATTG TGGCGCAGCA ACTGGTGCCT AAAGTCGATG GCACAGGACG ACGGGCGGCG
ATTGAAGTCT TGATCAATAC GCCACGTGTC GCGAGCTTGA TTGCTAAAAA CGAGCTGCAT
TTGCTCAAAG AAACCATGGC CAAATCGAAT GAACAGGGCA TGCAGACCTT CGACCAAGCC
TTGCTGCAAC TCTATATCGA TGGGGAAATC AGCTATGCCG ATGCGCTTCA CCATGCTGAC
TCGCCAAACG ACTTACGTTT AATGATCAAA CTGCAAAATA AAGAGCCTAC CAGTTCAAGC
TTTATGGAAG GCGTGACCTT GGATATGGAT TAA
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| Protein sequence | MDVRPFLKVM VERKASDLFI TAGFPPSAKI DGELRPLAES AFTPAQSLDF VESVMTEAQK
KEFHTTRECN FAFAVKDLGR FRVSAFWQRE SPGCVMRRIE TKIPEVEDLK LPPILKDLVM
SKRGLIIMVG GTGTGKSTSL AALVGYRNAH ARGHILTIED PVEFVHDHRK SIITQREVGI
DTESFDAALK SSLRQAPDVI LIGEIRTQET MEFALSFAET GHLCMATLHA NNANQALDRI
MHLVPESKHQ QLLFDLSLNL RGIVAQQLVP KVDGTGRRAA IEVLINTPRV ASLIAKNELH
LLKETMAKSN EQGMQTFDQA LLQLYIDGEI SYADALHHAD SPNDLRLMIK LQNKEPTSSS
FMEGVTLDMD
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