| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1194 |
|---|
| Symbol | |
|---|
| ID | 4251233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1397035 |
|---|
| End bp | 1398072 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638117779 |
|---|
| Product | pilus retraction ATPase PilT |
|---|
| Protein accession | YP_733331 |
|---|
| Protein GI | 113969538 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0809497 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATCA CTGAGTTATT AGCCTTTAGT GTAAAACACA AAGCCTCGGA TCTACACCTC
TCTGCAGGGA TATCTCCCAT GATCCGTGTC GACGGTGAAG TGAGAAAAAT AAACCTGCCC
GCGCTCGATC ATCAGGGTGT ACACAGCCTT GTGTACGACA TTATGAATGA TAAACAGCGT
AAGGACTTTG AAGAGCATTT AGAAATCGAC TTTTCGTTCG AAGTCCCTAA TTTAGCGCGT
TTCCGTGTGA ACGCCTTTAA CCAATCCCGC GGCGCTGCGG CGGTGTTTCG TACCATTCCC
AGCGAAATTT TGTCGCTCGA GCAGTTAGGG GCGCCTGAGA TTTTTAAGAA AATTTCCAGC
TTTCCCCGCG GCTTAGTGCT TGTTACTGGG CCTACAGGTT CGGGTAAGAG TACCACACTT
GCGGCCATGG TGGATTACAT CAATGAGAAC CGCCACGACC ATATCTTAAC CATTGAAGAT
CCTATCGAAT TCGTACATCA GAATAAGCAA TGTTTGATTA ACCAACGGGA AGTGCATCGT
CATACCCACA GTTTTAACGC GGCGCTGCGT AGCGCACTGC GTGAAGACCC TGACGTAATC
CTCGTCGGTG AGATGCGTGA CCTTGAAACC ATTCGTCTGG CGATGACGGC GGCCGAAACG
GGTCACTTAG TCTTTGGTAC CTTGCACACC ACCTCGGCGG CTAAGACCAT CGACCGTGTG
GTTGACGTTT TCCCTGCCGG TGAAAAGGAC ATGGTGCGTA CCATGTTATC TGAATCATTA
CAGGCGGTTA TTTCGCAAAC CCTGATTAAG AAAATCGGTG GTGGCCGTGT GGCTGCCCAC
GAAATCATGA TGGGTACTCC CGCTATCCGT AACCTTATCC GTGAAGATAA AGTGGCACAG
ATGTACTCAG CCATTCAAAC GGGGATGGCC CATGGCATGC AAACGCTCGA ACAGTGTCTG
CAAAACTTAG TGAACCGTGG CCTCATCACC CGTGAGGATG CCATGGCGAA GAGCTCAAAC
AAACAAGCGA CGTTTTAA
|
|---|
| Protein sequence | MEITELLAFS VKHKASDLHL SAGISPMIRV DGEVRKINLP ALDHQGVHSL VYDIMNDKQR
KDFEEHLEID FSFEVPNLAR FRVNAFNQSR GAAAVFRTIP SEILSLEQLG APEIFKKISS
FPRGLVLVTG PTGSGKSTTL AAMVDYINEN RHDHILTIED PIEFVHQNKQ CLINQREVHR
HTHSFNAALR SALREDPDVI LVGEMRDLET IRLAMTAAET GHLVFGTLHT TSAAKTIDRV
VDVFPAGEKD MVRTMLSESL QAVISQTLIK KIGGGRVAAH EIMMGTPAIR NLIREDKVAQ
MYSAIQTGMA HGMQTLEQCL QNLVNRGLIT REDAMAKSSN KQATF
|
|---|
| |