| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1160 |
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| Symbol | |
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| ID | 4251444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1364552 |
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| End bp | 1367188 |
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| Gene Length | 2637 bp |
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| Protein Length | 878 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638117741 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_733297 |
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| Protein GI | 113969504 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGATA TTACAATTTC ACCAAAACAG TTGTCGGATT GGGCAAACGA TTTACAGTTG
GTTGCCGATA TGACTCAGTC ACATGCTGTG GTCCTACAGG CCAGTGTGGC GGGTGACTAT
CGTCTATTAG TTCAGTCGTC TCAATGCCAA TCATCTGATA TTGAAGCCCT TATTCGGCAT
TTTAATCTTA AAGCGCATTT AAACCTGCAT CAAAATGCCA CTCCTAAAGT CAAAGTCGCC
TCTTCTGCTG ACACCGCTTA TAACCCCTTC AATGAATCAC GCACCTTTAG TCACCATCAG
GTGGACCTTC CCGAGGATAT TCGTCAGGCG TGTGCCTATA AGCGCGCCTT GATCCAAAAT
ATCAGCAGCA ATCTCCAATG GTGCGATACT GGGCTTGGCA GTTTGATTTA CCTGCCGATC
CTCTGGACTT CGGGGGCGCA TTTTGGCGTC TTGTGTGTGT ATAACAGCGA TCCTTTACAT
TTAGGGGATA GGGCGCTGCA ATTGGCTTCG CTCACGGTCA ATAGCCTACA GCTCAATTTG
AGCGAGTTGC TAAAGCAGCA TAAATACGCC TTGGAGGCGC AGCGCGGGCA AGTCTATGCG
CCCGATGTCA TTGACCTACA AACCTTTATC GATAGTTTTG AAGAACATAT TTGGGTTAAA
AATACCGAAG GTGTTTATAC CATCTGCAAC CATAGTGTTG AGAAAGCCTG GGAGTTGCCA
CGCAGTGAAA TTGTCGGCAA GACGGATGAA GACCTTTTTG GTAAAGAAAT CGCCGAGATT
TTTCTCAATG GTGACAGGCT TGCGATTGAA GCGGGGACAC CGATTATCGT CGCCGAGTGT
TTAGACGGTG AAAAACAGAA TAAACACTTA TGGTTAGAAA CCCTTAAAAT TCCGGCTACT
ACGGCCGACG GCGCGCTTGC CGGTGTCATA GGCATGACCC GCAATATCTC CAAGCATAAA
GAGGTTGAAG AGCAGCTCAC GCTGGCGACT AATGTGTTTA AACATACCCT CGAAGGTGTG
GTGATCACTG ACAGGCATGG CAATATCACC GATGTGAATG GTGCCTTCTA TGAAATCACT
GGCTACTCGC GGGAAGAGTT GCTCGGCCAA AATCCACGAT TATTTAACTC GGGTCGCCAC
GAGAAAGCCT TTTTCGATGC CATGTGGAAT CACTTACTCG AGACGGGTAA GTGGAATGGC
GAAATTTGGA ATCGCCGCAA GGATGGCACT ATCTTCCCGC AAAATATCAC CATCAGCACC
ATTTATGATG AGTTAGGTGA TGTGCGCTAT TTTGTGGCGG TATTTTCCGA TATTTCCGCT
CAAAAACAGA GCGAGGCCCA GCTCGCCCAT TTAGCTTATT TCGATCCTTT GACCCATCTG
CCAAATCGCA TGAAGCTGAT GATGCAGCTT AAACAAGAAC TCAGACATGC AAAAAGGCTC
AATGCCCAAC TAGCCACAGT GTTTATTGAT GTGGATTTGT TTAAACATAT CAACGACAGT
TTCGGCCACA GTATTGGTGA CGAAATGCTA GTGGAGTTGG CTAAGAGGTT ACGCAGTCAG
CTGCAAGAGC AAGATGTGTT GTCGCGAATT GGCGGCGATG AGTTTGTGGC GCTGATCTCG
GGCATTCAAA GCCATGAGGA TGCCGCCGCG GCCATTAACC AATTACGCCA AGTGTTTGAA
CAGCCCTTTG TGGTGAGCAC TGGGGATCAT CTGCGTCTGA CAGCCAGTAT GGGAGTGTCC
ATCTATCCCG ATGATGGCAG TAATGCCGAT ACCTTACTGC GTAACGCCGA TGCCGCCATG
TACCGCGCTA AGAGTGAAGG CCGCAATAAC TTTGCTTTTT ACACTGAGTC GCTCACTAAG
CAATCCTTTG AGCATCTAAA ACTGCAGAGT GCGCTTTATG GCGCCCTTGA GCAAAACGCT
TTGTATTTGA TGTATCAGCC TAAATTGGAT TTAGTCAGCC GTAAAACTAT AGGGGTTGAG
GCGCTACTGC GTTGGAATGA CCCGATATTG GGACAAATTT CCCCAGGGGT ATTTATTCCC
GTCGCCGAGA AAATCGGGCT GATTTACGAT ATTGGTTTGT GGGTGCTCGA AACCGCTTGC
CTTCAAGGTG TGCGTTGGCT TGCCGAGGGG AAACCCTTTG GCCGAATCGC CGTTAACGTT
GCCGGACAAC AGCTACAACG TAGCTCCTTT GTTGAGGATG TAAAACGCAT CCTGACACAA
ACAGGATTGC CCGCCACTTG CCTTGAGCTT GAAGTGACTG AAAGCGTGAT GATGCATAAT
CCCGATGTGG CGATTCGCGA CTTAAAGCTG CTAGGGGATC TTGGTATTGA GCTTTCGGTC
GATGATTTTG GTACCGGATA CTCCTCCCTT AACTATCTGA AAAAACTGCC GATTCATAAG
CTTAAGATTG ACCAATCCTT TGTGCGGGAT ATTCCCTTCG ACACCAACAA TACCGCTATC
GCTAAAGCCG TAATTGTTCT AGGGCATGCG CTCAAGTTAG AGATAGTGGC AGAAGGGGTT
GAGACTCAAG CACAGGCCGA GTTTTTAACC CAAAACCTGT GCGATCAGGC GCAGGGGTAT
CTCTTCAGCC GTCCGCTATT ACCCGCGGAT GTTGAGGCGT TTTTAGCGAA AGCCTAA
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| Protein sequence | MIDITISPKQ LSDWANDLQL VADMTQSHAV VLQASVAGDY RLLVQSSQCQ SSDIEALIRH
FNLKAHLNLH QNATPKVKVA SSADTAYNPF NESRTFSHHQ VDLPEDIRQA CAYKRALIQN
ISSNLQWCDT GLGSLIYLPI LWTSGAHFGV LCVYNSDPLH LGDRALQLAS LTVNSLQLNL
SELLKQHKYA LEAQRGQVYA PDVIDLQTFI DSFEEHIWVK NTEGVYTICN HSVEKAWELP
RSEIVGKTDE DLFGKEIAEI FLNGDRLAIE AGTPIIVAEC LDGEKQNKHL WLETLKIPAT
TADGALAGVI GMTRNISKHK EVEEQLTLAT NVFKHTLEGV VITDRHGNIT DVNGAFYEIT
GYSREELLGQ NPRLFNSGRH EKAFFDAMWN HLLETGKWNG EIWNRRKDGT IFPQNITIST
IYDELGDVRY FVAVFSDISA QKQSEAQLAH LAYFDPLTHL PNRMKLMMQL KQELRHAKRL
NAQLATVFID VDLFKHINDS FGHSIGDEML VELAKRLRSQ LQEQDVLSRI GGDEFVALIS
GIQSHEDAAA AINQLRQVFE QPFVVSTGDH LRLTASMGVS IYPDDGSNAD TLLRNADAAM
YRAKSEGRNN FAFYTESLTK QSFEHLKLQS ALYGALEQNA LYLMYQPKLD LVSRKTIGVE
ALLRWNDPIL GQISPGVFIP VAEKIGLIYD IGLWVLETAC LQGVRWLAEG KPFGRIAVNV
AGQQLQRSSF VEDVKRILTQ TGLPATCLEL EVTESVMMHN PDVAIRDLKL LGDLGIELSV
DDFGTGYSSL NYLKKLPIHK LKIDQSFVRD IPFDTNNTAI AKAVIVLGHA LKLEIVAEGV
ETQAQAEFLT QNLCDQAQGY LFSRPLLPAD VEAFLAKA
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