| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1157 |
|---|
| Symbol | |
|---|
| ID | 4251825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 1359889 |
|---|
| End bp | 1360470 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638117738 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_733294 |
|---|
| Protein GI | 113969501 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAAACG CAGAGTTTGA TAGGGCGCAG GTGCTCAGGG GGGCGATGGC CGCCTTTATG
CACAAGGGAT ACACCAAAAC CAGCATGCAG GATCTGACCC AAGCAACGGG GTTACATCCC
GGTTCCATTT ATTGCGCCTT TAGCAATAAG CGTGGATTGC TGATCGCCGC TATCGAGCAA
TATCAGCAGG ATAGAAACGA GCAGTTCAAG CTTATCTTCT CCAATAGCCG TCCCGTGCTG
GGTAATTTAA AGACCTACTT GGACAATATC GTGGTCGAAT GTTTAAGCTG CGATAGCCAG
CAAGCTTGTT TGCTCACTAA AGCGTTAAAT GAAATTGCAG AACAAGATGA TGAAATCCAA
AACATTATCA GTCAAAACCT CATGCTTTGG CAGAATGCGT TGACGGCACA ATTTGAATTA
GCAGCCTCCC AAGGGATGTT GCAAGGCGAG CTTAACAGTG AGCAGCGGGC GCAATACTTG
ATGATGGGTA TTTATGGGTT AAGAACCTTT GCCCATACCC ATCCGCAGGC GGAAATCCTG
CAACAATTGG CCGATAAATT GTTTGATGAT GTCTGCAGAT AA
|
|---|
| Protein sequence | MRNAEFDRAQ VLRGAMAAFM HKGYTKTSMQ DLTQATGLHP GSIYCAFSNK RGLLIAAIEQ
YQQDRNEQFK LIFSNSRPVL GNLKTYLDNI VVECLSCDSQ QACLLTKALN EIAEQDDEIQ
NIISQNLMLW QNALTAQFEL AASQGMLQGE LNSEQRAQYL MMGIYGLRTF AHTHPQAEIL
QQLADKLFDD VCR
|
|---|
| |