| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1127 |
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| Symbol | alaS |
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| ID | 4251795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1323037 |
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| End bp | 1325661 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638117700 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_733264 |
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| Protein GI | 113969471 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.435644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATCAAA CGACAGCAGC GCTTAGAAGT GCTTTCCTCG AATTTTTCCG CAGCAATGGT
CACCAAGTTG TGGACAGTAG TTCTCTTGTA CCAGGCAACG ATCCCACGCT TTTATTCACC
AACGCCGGTA TGAACCAGTT CAAGGACGTG TTTCTTGGCA TGGACAAACG TAGCTATACA
CGTGCGACCA CTGCTCAACG CTGCGTCCGT GCGGGTGGTA AACACAACGA TTTAGATAAC
GTTGGTTACA CCGCGCGTCA CCATACTTTC TTCGAAATGC TGGGCAACTT CAGCTTTGGT
GATTATTTCA AAGAAGATGC GATTCGTTTT GGTTGGACAT TCCTGACTGA AGTCTTGAAG
CTACCAAAGG AACGTCTGTG TGTGACTGTT TACCAAACAG ACGATGAAGC CTTTGAAATT
TGGAATAAAA AGATTGGTGT TGCCGCTGAA AACATCATTC GCATCGGCGA TAACAAGGGC
GCGCCATACG CTTCAGATAA CTTCTGGCAA ATGGGTGACA CAGGTCCTTG TGGTCCATGT
ACCGAAATTT TCTACGATCA CGGCGATCAT ATTTGGGGCG GACGTCCCGG TAGCCCAGAA
GAAGATGGCG ACCGTTTCAT CGAAATCTGG AACATCGTAT TCATGCAATA CAATCGTCAA
GCTTCTGGTG AAATGTTGCC GCTGCCAAAA CCTTCAGTCG ATACCGGTAT GGGGATTGAG
CGTATCGCTG CGATTATGCA GGGCGTTCAT TCAAACTACG AAATCGATAT TTTCCGCGCC
TTGATTGCTA AAGCAGCCGA AATCATCGGC GTGACTGACT TATCTAACAA GTCACTGCGC
GTTATTGCCG ACCATATCCG TTCATGCGCC TTCTTAGTTG CCGATGGTGT AATGCCATCG
AATGAAGGTC GTGGCTATGT GCTGCGCCGT ATTATTCGCC GCGCAGTGCG TCATGGTAAC
AAGTTAGGGG CAACTGAAGC CTTCTTCTAC AAGTTAGTTC CGACGCTAAT CGAAGTGATG
GGCGATGCCG CTAAAGGTCT TGCCGATACT CAAGTGATTG TTGAAAAAGC CCTTAAAGCG
GAAGAAGAGC AGTTTGCTCG TACACTTGAG CGTGGTTTAG GTATTCTAGA TAGCGCATTA
AACGAATTGC AGGGCGACAC CTTAGACGGT GAAACAGTCT TCAAACTGTA CGATACCTAT
GGCTTCCCAG TGGATTTAAC CGCTGACGTA TGCCGTGAGC GTAACATTAT TGTCGATGAA
GCGGGCTTCG AAGCGGCGAT GGCTGAACAA CGTAGCCGCG CTCAAGCCGC GGGTAACTTC
GGCGCCGATT ACAACGCTGC ACTGAAAATT GATGCTGAAA CCGCATTCTG TGGTTACTCA
GAACTCACAG GCAATGCCAA AGTCACTGCA CTTTACCTAA ACGGTGAGTC AGTGCCTGCA
ATCAATGCGG GTGATGATGC CGTAGTCGTG CTCGATGTGA CGCCTTTCTA CGCAGAATCG
GGCGGCCAAG TCGGTGATAA GGGCGTATTA GTGGCTCAAG GTATTGAGTT TGCTGTTAGC
GATACGCAAA AGTTTGGTCA AGCTTCAGGC CACAAAGGAA CGTTAACGGC TGGCAGCTTA
AGCGTTGGCC AAGTACTTGA AGCAAAAGTG GATAAGAAAC TGCGTCACCG CACCCAGTTA
AACCACTCAG TGACTCACTT ATTACACGCT GCGCTGCGTC AAGTGTTGGG TACTCATGTC
ACTCAAAAAG GTTCGTTAGT TGACCCTGAG CGTTTACGTT TCGACTTCTC TCATTTCGAA
GCGGTGAAAC CTGCTGAATT GAAACAGGTT GAAGAGTTAG TCAACACCCA AATTCGCCGT
AACCATGAGC TGAAAGTCGC TGAAATGGCG ATTGATGAAG CGAAAGAAAA AGGCGCTATG
GCACTCTTTG GTGAGAAGTA CGATGCGCAA GTGCGTGTCG TCACTATGGG CGATTTCTCT
ATCGAGCTGT GTGGTGGTAC TCACGTTGGC CGTACCGGTG ACATTGGTCT GTTCAAAATT
ACCTCAGAAG GCGGTATAGC TGCGGGCGTT CGCCGTATCG AAGCGGTAAC CGGCGCTGCG
GCGATGGCCT ATGTGGCACA ACAACAAGCG CAACTTGAAG AAGCAGCAGC ACTGCTTAAA
GGCGATACAC AATCTGTTGT GGCTAAGCTG AAAGCGCAGC TGGATAAAAT GAAGCAGCTT
GAAAAAGATA TGCAGCAACT AAAAGATAAG TTAGCTGCGG CTGCGAGTGC GGATTTAGCC
TGTGATGCGG TTGTGGTTAA TGGCGTAAAT GTGCTGATTA AGAAGCTTGA TGGCGTTGAA
GCAGGTGCAC TGCGTGGACT GCAAGATGAG TTGAAGCAAA AGCTGAAATC CGCCGTTATC
CTGCTAGGTG TGGCTCAAGA AGGCAAAGTG AACCTTATCG CGGGTGTGAG CAACGACTTA
GTCGGTAAAG TTAAAGCCGG TGAACTGGTT GCTATGGTTG CAGCGCAGGT GGGTGGTAAA
GGCGGTGGCC GCCCTGATAT GGCTCAAGCG GGTGGTAGCC AACCAGAAAA CCTGGATGCG
GCACTGTCTC AAGTATTACC TTGGATTACT GAGCGTTTAG CTTAA
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| Protein sequence | MYQTTAALRS AFLEFFRSNG HQVVDSSSLV PGNDPTLLFT NAGMNQFKDV FLGMDKRSYT
RATTAQRCVR AGGKHNDLDN VGYTARHHTF FEMLGNFSFG DYFKEDAIRF GWTFLTEVLK
LPKERLCVTV YQTDDEAFEI WNKKIGVAAE NIIRIGDNKG APYASDNFWQ MGDTGPCGPC
TEIFYDHGDH IWGGRPGSPE EDGDRFIEIW NIVFMQYNRQ ASGEMLPLPK PSVDTGMGIE
RIAAIMQGVH SNYEIDIFRA LIAKAAEIIG VTDLSNKSLR VIADHIRSCA FLVADGVMPS
NEGRGYVLRR IIRRAVRHGN KLGATEAFFY KLVPTLIEVM GDAAKGLADT QVIVEKALKA
EEEQFARTLE RGLGILDSAL NELQGDTLDG ETVFKLYDTY GFPVDLTADV CRERNIIVDE
AGFEAAMAEQ RSRAQAAGNF GADYNAALKI DAETAFCGYS ELTGNAKVTA LYLNGESVPA
INAGDDAVVV LDVTPFYAES GGQVGDKGVL VAQGIEFAVS DTQKFGQASG HKGTLTAGSL
SVGQVLEAKV DKKLRHRTQL NHSVTHLLHA ALRQVLGTHV TQKGSLVDPE RLRFDFSHFE
AVKPAELKQV EELVNTQIRR NHELKVAEMA IDEAKEKGAM ALFGEKYDAQ VRVVTMGDFS
IELCGGTHVG RTGDIGLFKI TSEGGIAAGV RRIEAVTGAA AMAYVAQQQA QLEEAAALLK
GDTQSVVAKL KAQLDKMKQL EKDMQQLKDK LAAAASADLA CDAVVVNGVN VLIKKLDGVE
AGALRGLQDE LKQKLKSAVI LLGVAQEGKV NLIAGVSNDL VGKVKAGELV AMVAAQVGGK
GGGRPDMAQA GGSQPENLDA ALSQVLPWIT ERLA
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