| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1119 |
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| Symbol | |
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| ID | 4251087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1313534 |
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| End bp | 1314661 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638117692 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_733256 |
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| Protein GI | 113969463 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.774647 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAC TACATTACCT GTACGGCAAA CCGACGGGCA CCGCAGATTT AAGAACCGTT
AACAGCGACT TTATCGTGAA AGAGATTTTG CCTTTTAGCC CGTCGGGCGA GGGCGAGCAT
CATTTAGTCC ACATTCGTAA GGATGGGCTG AATACGGTAC AAGTGGCTGA AATGCTGGCG
AAGTTCGCTA AGGTTCATCC CAAAGAGGTG ACCTATGCCG GACAAAAAGA TAAAAATGCC
ATTACAGAAC AGTGGTTTGG CATTCGTATT CCAGGTAAAG AAACCCCTGC GTGGAGCGAG
CTAAACAGCG AGCGTTTAAC CATTTTATCC AGTAGTCGCC ACAGCAAAAA ACTACGTATT
GGCGCGCTTT TGGGCAACCG TTTTATTCTT ACCCTGCGCA ATGTCACCAA TGTGGAAGAC
ATTATCAACC GTATCGAAAA GGTCAGCCAA ATTGGTGTGC CCAATTATTT TGGTGAGCAG
CGTTTCGGTC ATGATGGTAA AAACCTAGTG ATGGGACGGC AAATGCTGGC GGGCAAAAAG
GTGAAAGACC GTAATAAGCG CAGCATGTAT CTGTCTGCGG TGCGCTCCAA TCTGTTCAAT
ACCGTTGTCT CCTATCGTTT GGCGAATCAT GGCACTAAAC CCTTAGCGGG GGATTGCGTG
ATGCTAGCAG GCAGTAAGAG CTTTTTCGTC ACGCCAGAAT GGGATTTAGT GGTATTAAAG
CGTTTGATTG AGAAAGATAT TCAGCTTTCT GCCCCACTTT GGGGGCGTGG AAAAATGCTG
CCGCAGGGTG AAGCCGCCGA GGTTGAAACC CTCGCCATGG CAGCGCTGAG CGAAGATTGC
TACGGCCTTG AGCACGCGGG GCTTGAGCAG GAGCGTCGTC CATTGCTGCT CGAACCTCAA
GGCCTTAAGT TCGAGCAAAC TGCGGATGGA CTGGTGCTCG AGTTTATCTT ACCTGCGGGC
AGTTTTGCGA CATCGCTGTT AAGAGAACTG GTTGATTATC AAGATGTGAA AGAGCTGCAA
TGGCAAGCGA CAGTCTCACC TGATGCTAAT GCTCCTGAGG CCAATCTCGC CACTGAAAGT
GATGTGGCTG AGGTCAGTTC AACAGATAAT GGCGAGTCCG CTTTATGA
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| Protein sequence | MSELHYLYGK PTGTADLRTV NSDFIVKEIL PFSPSGEGEH HLVHIRKDGL NTVQVAEMLA
KFAKVHPKEV TYAGQKDKNA ITEQWFGIRI PGKETPAWSE LNSERLTILS SSRHSKKLRI
GALLGNRFIL TLRNVTNVED IINRIEKVSQ IGVPNYFGEQ RFGHDGKNLV MGRQMLAGKK
VKDRNKRSMY LSAVRSNLFN TVVSYRLANH GTKPLAGDCV MLAGSKSFFV TPEWDLVVLK
RLIEKDIQLS APLWGRGKML PQGEAAEVET LAMAALSEDC YGLEHAGLEQ ERRPLLLEPQ
GLKFEQTADG LVLEFILPAG SFATSLLREL VDYQDVKELQ WQATVSPDAN APEANLATES
DVAEVSSTDN GESAL
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