| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1111 |
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| Symbol | |
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| ID | 4251079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1303867 |
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| End bp | 1306074 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638117684 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_733248 |
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| Protein GI | 113969455 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000170035 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.84646 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCTCTG TTCGCGAAGC GCACTTTAAT GATCCCGATT TTCATCTTGA AGATTGGGTG
GCTCGCTATG TCAGTCATGT CGAGGAGGCG CAAACCTTAC TCACCCTGAT TGCACAGGTC
GAAGCCTTAC CCGCTAAGAG TCCTGCCGCG AAAAGAGAAC TGCTCGAACG TGCCCGCGAG
ATGATTGAAA TCCTCGCGCC GCTGAATATG GATATCGAGA CGCTGCAAGC GGCTATCCTG
TTTGTGGTGT TTGATGCCGG TTTATTAAAC GAAGAAGCAA TCAAAGAAAA ATTTGGCGAG
TCCCTCGCGC GGTTAGTCGC CAGCGTTGTG ACCATGGATG CCATTGGTGC GTTAAAAATT
AATCCCAATA GCCGCTCAAC CGAGCCGCAA ATCGACAATA TCCGCCGCAT GTTACTGGCG
ATGGTCGAAG ACGTACGCGC CGTGGTGATT AAACTGGCCG AGCGTGTTTG TTTGCTGCGC
GCCGTGAAAA ATGCCGACGA AGAAACCCGC GTCTTGCTTG CCCGCGAAAT TGCCGATATC
TATGCACCGC TCGCTAACCG TTTGGGGATT GGTCAGTTAA AGTGGGAATT AGAAGATATT
TCCTTCCGTT ATCTGCATCC AGATACTTAC AAGGACATTG CGAAACAGCT CGACGGTAAG
CGGTTAGACC GCGAAGTCTA TATCGAAAAA TTTGTCGAGC AGTTGCAGCA GCGCCTCGAT
GAGGATCATA TCCGCGCTAA GGTGTATGGT CGTCCAAAAC ATATCTACAG CATCTGGCGC
AAGATGAAGG GCAAACACCT CAAGTTTGAT GAGTTGTTTG ACGTGCGCGC CGTGCGGATT
GTCACCGAGC GTTTGCAGGA CTGCTATGGC GCCTTAGGGG TCGTGCACAC TCTTTGGCAC
CATATCCCGC GCGAGTTCGA CGACTACGTG GCCAACCCTA AACCTAACGG TTATCAATCG
ATTCATACCG TAGTGGTGGG GCCTGAAGGT AAAACCGTTG AAATTCAAAT TCGTACCCAA
GATATGCATG AAGATGCAGA GCTGGGGGTT GCCGCGCACT GGAAATACAA AGAGGGTAAT
CACTCCGGCA AACAGAGCGG CTACGAAGAA AAAATCAATT GGCTGCGTAA AATTCTGCAA
TGGCAGGAAG ACGTGGTCGA GAGCGGCAAC TTGGTTGAAG AAGTCCGCAG CCAAGTGTTT
GAGGATAGAG TCTATGTCTT TACCCCTAGC GGTGAAGTCG TTGACTTGCC ACTCGGCTCA
ACCGTGCTCG ACTTTGCCTA CTATATTCAC TCGCAGGTCG GCCATAAGTG TATCGGTGCC
AAGGTCGATG GCCGCATTGT GCCGTTTACT TATCAGGTTG AAACGGGTGA GCGTATCGAG
ATCATCACCT CGAAGCACCC TAATCCTAAG CGTGATTGGC TTAATCCCAA CTTAGGTTAT
ATCCGCACAT CGCGGGCGCG CTCGAAAATT CAGCATTGGT TTAAGCAGCA GGACCGCGAT
AAAAACATTA TCGCTGGCAA AGAAATGCTC GAAGCCGAGC TGGCGCGAGT CAGCCTTAAA
ATCAAAGATG CCGCCATCGC CGTTGAGCGT TTTAATATGG CGAGTATGGA CGACTTGCTT
GCAGCTATCG GCGGCGGTGA TGTGCGTTTA CATCAGGTCG TTAACCATAT TCAAAGTAAG
TTGCGCCTCG ATGAGGCGAG CGAAGAAGAT GCGGTAGAAG AATTAGTTAA GAAGAGCCAA
CCTAAATCTG GCACCAATAG CCGTGGGCAG GTGGAAGTGA ATGGCGTGGG TAACTTACTC
AGCCATATCG CCCGTTGCTG CCAGCCTGTG CCAGGGGATG AGATTTTAGG CTTTATCACT
AAAGGGCGCG GTATTTCGGT GCATCGCTCC GACTGTGAAC AGGTGAAAGA GTTAATGCGC
GTTCACCCAG AACGTGGCGT CGATGTGGTT TGGGGCGAAA ATTACTCTGG CGGTTATCGC
ATGCGCCTGC GCGTTTTGGC CCATGATCGC AGCGGCTTAT TGCGGGATCT GACCTCGGTA
CTCGCCGCCG AAAAATCCAA TGTGCTTGCC ATGAGTTCCT CATCGGATAT TAAGAATCAG
ACGGCGGCCA TTGAGCTGGA ATTAGAGCTT TATAATCTCG ATGGCTTATC GCGGGTGTTA
TCTAAGCTCT CCCAAGTCGA TAGCGTGATA GAAGCAAGAC GGCTTTAA
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| Protein sequence | MVSVREAHFN DPDFHLEDWV ARYVSHVEEA QTLLTLIAQV EALPAKSPAA KRELLERARE
MIEILAPLNM DIETLQAAIL FVVFDAGLLN EEAIKEKFGE SLARLVASVV TMDAIGALKI
NPNSRSTEPQ IDNIRRMLLA MVEDVRAVVI KLAERVCLLR AVKNADEETR VLLAREIADI
YAPLANRLGI GQLKWELEDI SFRYLHPDTY KDIAKQLDGK RLDREVYIEK FVEQLQQRLD
EDHIRAKVYG RPKHIYSIWR KMKGKHLKFD ELFDVRAVRI VTERLQDCYG ALGVVHTLWH
HIPREFDDYV ANPKPNGYQS IHTVVVGPEG KTVEIQIRTQ DMHEDAELGV AAHWKYKEGN
HSGKQSGYEE KINWLRKILQ WQEDVVESGN LVEEVRSQVF EDRVYVFTPS GEVVDLPLGS
TVLDFAYYIH SQVGHKCIGA KVDGRIVPFT YQVETGERIE IITSKHPNPK RDWLNPNLGY
IRTSRARSKI QHWFKQQDRD KNIIAGKEML EAELARVSLK IKDAAIAVER FNMASMDDLL
AAIGGGDVRL HQVVNHIQSK LRLDEASEED AVEELVKKSQ PKSGTNSRGQ VEVNGVGNLL
SHIARCCQPV PGDEILGFIT KGRGISVHRS DCEQVKELMR VHPERGVDVV WGENYSGGYR
MRLRVLAHDR SGLLRDLTSV LAAEKSNVLA MSSSSDIKNQ TAAIELELEL YNLDGLSRVL
SKLSQVDSVI EARRL
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