| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1110 |
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| Symbol | rumA |
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| ID | 4251078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1302286 |
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| End bp | 1303677 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638117683 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_733247 |
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| Protein GI | 113969454 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0371274 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.891306 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGGTC TTTACCAGTT TTTTATTGAT TTAGAGGCCG AAATGGCACA ATTTTTTAAA
GCAAAACCAA ATAGTTCCAA GCAATTGTCC GCGAAGCAGT CCTTTAGCGT GCACCAGCTC
GATCATCTAG GGGCAGGTAT AGCACAACAT CAGGGAAAAG TCGTATTTAT CCCCGGCGCC
TTGCCCAGCG AAACCGTGCA GGCGCAGCTG ACCGAACAAA AGAAAAACTA TGCCCGAGCC
AAGCTAATTA AAGTCGAGAC GCCGAGCGCT GAGCGAGTCA CGCCGCTATG CCCACATTAC
CAAAGCTGTG GCGGCTGCGA TTTACAGCAT ATGTCATTAG CTGGGCAACG CGAGCATAAG
TCTGCGGCCT TGGTTGATAT TATGGCTAAA TTTGCTGGCG CCGAAGGCAA CTCAGTGCCC
GCCTTGACGG GTGAGGGGTG GCACTATCGT CGCCGTGCCC GCCTTGCGAC CCTATTTGAT
AAAAATACCA AGCAGTTGAG CCTAGGGTTT CGTGCCTCGA GCAGCAACCA AGTCGTGCCT
ATTGATAGCT GTTTAGTCTT GGCGAAACCC TTATCGGATT TAATTGCCCC GTTTGCTAAG
TTGCTTAATC AATTGGCGGC CAAATCGAGT CTTGGGCATT TAGAGTTGAT TGATGCCGAC
AACGGCCATT TTGCGGTAAT TCGGATCACT AAATCCTTAA ATGATAAGGA CATGGCTAAG
CTTGCGCAGT TTGCCGAACA TCATCAAATC CATATTTGTT TGCAAGACAA CAACGGCGAG
TTCCATGGGG TGAATGGCAC GCTGTTATTG CCCGTTTACC AGTTGCTCGA TGATAAAGCT
GGTGCAACGC CTGTGAGCCT CACCTTCACC CCGGGTAACT TTGTGCAAGT GAATGCGCAA
ATTAACAAGG CCATGGTGGC GCAGGCGTTA GACTGGTTAG CGCCGCAGCC GGGTGAGCGA
ATTCTCGATC TCTTCTGTGG TATGGGGAAT TTCAGTTTGC CATTAGCTAA ACTGGGCGCC
GAAGTGATTG GGGTTGAAGG GGTGCCAGAT ATGGTTAGCC AAGCCCGTGA AAACGCGGCG
GCAAATGGCT TAAGCAATTT AACCTTTTAC CATGGCGATT TAAGTGCCGA TTTATCCTGC
GAGCCTTGGA TGGGCAAGAT TGATAAGTTG CTACTCGATC CTGCCCGCGC GGGGGCGTTT
GAGAGTTTGC AATGGCTTAA GAAGATGAAA CCTCGCCAAG TAGTGTATGT GTCTTGTAAT
CCGGCGAGCT TGGCCCGCGA CAGTGCGGTG TTACTTGAAC GTGGCTACAA GTTACAAAAG
TTAGGTTTAA TCGATATGTT CCCGCAGACA CATCATATCG AAGCCATGGC GTTGTTTGAG
CTTGCAAAAT AA
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| Protein sequence | MGGLYQFFID LEAEMAQFFK AKPNSSKQLS AKQSFSVHQL DHLGAGIAQH QGKVVFIPGA
LPSETVQAQL TEQKKNYARA KLIKVETPSA ERVTPLCPHY QSCGGCDLQH MSLAGQREHK
SAALVDIMAK FAGAEGNSVP ALTGEGWHYR RRARLATLFD KNTKQLSLGF RASSSNQVVP
IDSCLVLAKP LSDLIAPFAK LLNQLAAKSS LGHLELIDAD NGHFAVIRIT KSLNDKDMAK
LAQFAEHHQI HICLQDNNGE FHGVNGTLLL PVYQLLDDKA GATPVSLTFT PGNFVQVNAQ
INKAMVAQAL DWLAPQPGER ILDLFCGMGN FSLPLAKLGA EVIGVEGVPD MVSQARENAA
ANGLSNLTFY HGDLSADLSC EPWMGKIDKL LLDPARAGAF ESLQWLKKMK PRQVVYVSCN
PASLARDSAV LLERGYKLQK LGLIDMFPQT HHIEAMALFE LAK
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