Gene Shewmr4_1109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1109 
Symbol 
ID4251077 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1299419 
End bp1302226 
Gene Length2808 bp 
Protein Length935 aa 
Translation table11 
GC content49% 
IMG OID638117682 
Producthybrid sensory histidine kinase BarA 
Protein accessionYP_733246 
Protein GI113969453 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.715392 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCCTG TCAACAACAT GACCAAATAC AGCTTACGTT CCTGGGTTCT GGTGCTAGCG 
CTTGCGCCGA CGATCTTAGT CGGTATTCTG CTGGGCAGCT ACTTTACCAT AAATCGCTTC
TATGAACTCG AAGATACGCT GATTGAACAG GGCAGCAATA TTATCGAACC TTTAGCAATT
GCCAGTGAAG TGGGACTCGT GGGCAATGAC AGGGAAGCGA CCAAACGACT CCTTGCCGCC
GCGCAACTCA ATAAGTCCAC ACTCGTCAAA TCCATCGCCA TTTTTGACAT TCAAAATCAA
CTCTTTGTCA CATCGCATTA CCACAAAGAC TTCGAAATCA TGCGCTATAA AGAGGCGCTG
AGTAATCTGC ACAAAACCGA AATCGAGCAT GTAGGCGATA GCCTTATCCT TCGAACGCCG
ATTTTTGCTA CCGCCCCTCC GGCGCCGGGC GCGACCATCA ATTTTGATAT TCAAACCGAT
AACGGCGAGT TGCTCGGCTA TATTTCGGTG ATTATCAATA AAGAACGCGC GCTGCTCGAA
CAGCACAGGG CCGCCGTGGC CGCCTTTATT ATCGTCTTGA TTGGGGTGCA ATTAAACCTG
TTGTTTACCT TTCGTCTGGT TAAAAACGTT ACCCAGCCGA TTACCGAAAT GGTGCGAGTG
GTGGCCAAAA TTCGCGAGGG TAAACTCGAT GCGAGGCTCG AAGGTAATCT TATCGGTGAG
CTGGATTTGC TTAAACGCGG TATTAACGCC ATGGCGGGTT CGCTATCGGA ATATCACGAT
GAGATGCAGC AAAATATCGA TCAGGCCACC TCGGATCTGC GGGAAACCTT AGAGCAGATT
GAGATCCAAA ACGTCGAGCT CGACTTAGCC AAAAAACGCG CGCTGGAGGC CAGCCGCATT
AAGTCGGAGT TCTTGGCGAA CATGTCCCAC GAACTGCGCA CGCCATTAAA CGGCGTGATA
GGCTTTGCCC GTCAGCTCGT TAAAACCCCG TTGCACTCGA GCCAAGTCGA TTACATTAAT
ACCATCGAGC GCAGCGCGAC TAACCTACTG GCGATTATCA ACGATATTCT CGACTTCTCG
AAACTCGAAG CCGGTAAAAT GGTGTTAGAA AAAATGCCAT TCGGCTTAAG GGAAACCTTA
GGTGAGACGA TTACCTTAAT CTCCGGCAGC GCGCAGGCGA AAGGGCTTGA GTTAGTTGTC
GATATTGCAC CCAACGTCCC CGACAATGTT AATGGCGATG CGATGCGTGT TTGTCAGATT
ATCAATAACT TAGTAGGCAA TGCCATCAAG TTTACCGATT CGGGCAGCGT GTTAGTCAAA
TTAGAGCTAC AAAATCAAAC CGACGAACAA GTGGTACTGC GCTGTGATGT AATTGATACC
GGGATTGGGA TTGACGACAG CCAGCAGGAC TTCCTCTTCC AAGCCTTTGG TCAAGCGGAC
TCCTCGATTT CTCGCCGCTT TGGCGGCACA GGGCTGGGGC TCGTTATCAC TAAGCGCCTA
GTCAATCAAA TGGGCGGCCA AATTGGCTTT ACCTCGGCGG TGGATAAGGG TTCAAACTTC
TGGTTCACCC TGCCATTGGG CCTAGGTCAA TTCCAGATCG GCGATTCGCT ACCCCTTGAA
AAACTCAAAG ATAAAACCGT GCTGTTTTAT GAGCCCAGAG TGCTCACCCA TTCGGTGATT
AGTCGCCAAC TAAAACAGTG GGATACCAAA GTTACCCACC ATCAACACAT TCCGAGCTTA
CTCACGACGC TCTCAACCAC TGAGCATCAG TTCGATTATG TGTTATTGAG CTGCCATGGA
TTTAGCAATC CCAATCAATT AGTCAGCACC TTAAACCAAG CCAAGACCAA GACGGATTGC
TTAATTGTAC TGTTCGATTG CCAAGAGCAG GAAGTGCTAA GCCAGTTTAT TCGCCCCAAT
GCCGATGTAG TGTTGTCACT GCCAGTAAGC GAGCACCAAC TGGCGCGCAA TATGCTCTAT
CCACCGATGG AATATGATAT TTCACCACCT GCCAGCATCA CAGTGCCCGC CGCGCGCCAA
TCACTGACCG TATTGGCGGT GGACGATAAC TTTGCCAATT TAAAACTGAT TGATACGCTG
CTTAGTGAGT TAGTGACGAC AGTTATCGCC GTTAACAGCG GTGAAGAAGC CGTGAAACAA
GCCAAGGGCC GCACCTTTGA CCTTATCTTT ATGGATATTC AGATGCCAGG CACCGACGGG
ATCAGCGCCA CTAAGCAAAT CCGTCAAGGG TCGATGAACC GCAACACGCC AATTATAGCC
GTGACGGCCC ATGCGATAGC CGAGGAGCGT GAGCTGATTT TAGGCTGTGG TATGGATGGC
TATTTGCCCA AGCCCATAGA TGAAGCCGCC CTCAAAGCGG AGATAAACCG CTGGATCACC
CGGCCCAAGT TTACCCACTT CGATTTACAT ACCCTCAACT GGGATTTGTG TCTCACCCAA
GCCAACCATA AGTCGGATTT GGCGTTAGAT ATGTTGCGTA TGCTGTTGGA CTCGCTGCCC
CAAACCGTCT TGGCAATCGA GACGGCGCTG GGTCAGGACG ATCAGGACAC TATGCTCACA
ACTATCCACA AACTTCATGG TGCCAGTTGC TATTGCGGAG TGCCAACGAC ACAGCGATTA
TGCCAAGAGA TTGAATCGGC ATTGAAACGT GATGCCCGTG TCGAAGATCT CGAACCGGAA
ATACTAGAGT TACTTGATGA GCTAACTAAG GTAGAATCGG CGGCAAAACA AGTGCTATCA
CAGCTATCAG CGGAAATTAC AGATGACCAA AAAAACGGGC TTCTTTAA
 
Protein sequence
MNPVNNMTKY SLRSWVLVLA LAPTILVGIL LGSYFTINRF YELEDTLIEQ GSNIIEPLAI 
ASEVGLVGND REATKRLLAA AQLNKSTLVK SIAIFDIQNQ LFVTSHYHKD FEIMRYKEAL
SNLHKTEIEH VGDSLILRTP IFATAPPAPG ATINFDIQTD NGELLGYISV IINKERALLE
QHRAAVAAFI IVLIGVQLNL LFTFRLVKNV TQPITEMVRV VAKIREGKLD ARLEGNLIGE
LDLLKRGINA MAGSLSEYHD EMQQNIDQAT SDLRETLEQI EIQNVELDLA KKRALEASRI
KSEFLANMSH ELRTPLNGVI GFARQLVKTP LHSSQVDYIN TIERSATNLL AIINDILDFS
KLEAGKMVLE KMPFGLRETL GETITLISGS AQAKGLELVV DIAPNVPDNV NGDAMRVCQI
INNLVGNAIK FTDSGSVLVK LELQNQTDEQ VVLRCDVIDT GIGIDDSQQD FLFQAFGQAD
SSISRRFGGT GLGLVITKRL VNQMGGQIGF TSAVDKGSNF WFTLPLGLGQ FQIGDSLPLE
KLKDKTVLFY EPRVLTHSVI SRQLKQWDTK VTHHQHIPSL LTTLSTTEHQ FDYVLLSCHG
FSNPNQLVST LNQAKTKTDC LIVLFDCQEQ EVLSQFIRPN ADVVLSLPVS EHQLARNMLY
PPMEYDISPP ASITVPAARQ SLTVLAVDDN FANLKLIDTL LSELVTTVIA VNSGEEAVKQ
AKGRTFDLIF MDIQMPGTDG ISATKQIRQG SMNRNTPIIA VTAHAIAEER ELILGCGMDG
YLPKPIDEAA LKAEINRWIT RPKFTHFDLH TLNWDLCLTQ ANHKSDLALD MLRMLLDSLP
QTVLAIETAL GQDDQDTMLT TIHKLHGASC YCGVPTTQRL CQEIESALKR DARVEDLEPE
ILELLDELTK VESAAKQVLS QLSAEITDDQ KNGLL