| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1106 |
|---|
| Symbol | |
|---|
| ID | 4251074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1297610 |
|---|
| End bp | 1298509 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638117679 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_733243 |
|---|
| Protein GI | 113969450 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.51289 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATG ATGTAGGCGG CGAGCTGCAA TTAATTTATC TGTTTGTGCA TTTAGTGAAT
GCGGGGAGTT TTTCTCTGGC GGCTAAAGAA CTCGATATGC CCATCGCCAC CGTGAGCCGT
AAGCTGGCCA AACTTGAGGA AAAGCTTGAT AAGCAGTTGT TTATGCGTAG CACCCGTAAA
CTGCGGTTAA CCGAAGAAGG CTTAGCATTA TTCCAACGTT ATCAGAGCGT CATTGCCCAA
TTTGATGAAC TCAGTGGCAT TGGTAGCGAT AAGCCCGAAG GGACATTGCG GATTGCGGCG
CCGATTTCGA TTATTTCTAT CATCTTTATC CGCGCATTGA ACGAATTTGG GCGTTTATAT
CCCGATATTC GCTTACATAT CTCACAAAGT AATGAGTTAG TGGATTTAAT CGATAAAGGG
ATCGATGTGG CGATTGTGGG CGGCGCGCAG CCTGATTCCT CTTGGGTGTC GAGCACCTTA
GGTGAACTCG ATTATCGCCT GTTTGCCACG CCGGAATATT TAGCCACTGC GCCAAAGTTA
ACCCATCCCG ATGACCTCGA AGCCCACCAG TTAATTAAGG TTTGGCCACT GTTTAATTGG
CATTTAAAGC ACCCCAATGG CGAGTCGTTC TATTTTAATG GTCCGACAAA ACTCACGCTT
ACGGATCTTC ACGGTGCGAT TCAGGCGACA CTCGACCACG GCGGCATTCT CTATGGCCCA
GAATTATTTG TAAAACAACA GATTAAAGAT GGTCAGTTAA AAGTGTTGCT GCCGGAATGG
ATAGGTGAGC AGCGCAGAAT ATCGATTCTG TATCACCAAC GGAGTCAGCA GCCGCAGAAG
GTCAGGGTGT TTATCGAGTT TATGCAGTCT AAGGCGCCTG AGCTGTTCTC GATGGCGTAA
|
|---|
| Protein sequence | MADDVGGELQ LIYLFVHLVN AGSFSLAAKE LDMPIATVSR KLAKLEEKLD KQLFMRSTRK
LRLTEEGLAL FQRYQSVIAQ FDELSGIGSD KPEGTLRIAA PISIISIIFI RALNEFGRLY
PDIRLHISQS NELVDLIDKG IDVAIVGGAQ PDSSWVSSTL GELDYRLFAT PEYLATAPKL
THPDDLEAHQ LIKVWPLFNW HLKHPNGESF YFNGPTKLTL TDLHGAIQAT LDHGGILYGP
ELFVKQQIKD GQLKVLLPEW IGEQRRISIL YHQRSQQPQK VRVFIEFMQS KAPELFSMA
|
|---|
| |