Gene Shewmr4_1098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1098 
Symbol 
ID4251066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand+ 
Start bp1289553 
End bp1290656 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content50% 
IMG OID638117671 
Product3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II 
Protein accessionYP_733235 
Protein GI113969442 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase
[COG0807] GTP cyclohydrolase II 
TIGRFAM ID[TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.000498097 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.638358 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCTGC ACAGTATAGA AGAGATCATC GAGGATATTC GTCAAGGCAA AATGGTTATT 
TTGATGGATG ACGAAGACAG AGAAAACGAA GGCGACCTGA TTATGGCGGC CGAGCTGGTC 
ACGCCTGAAG CGATTAACTT TATGGCGAAA TACGGTCGTG GACTCATCTG TCAAACGATG 
ACTAAAGCCC GTTGCCAGCA GTTAAACCTG CCCTTGATGG TGACTAATAA CAATGCGCAG 
TTCTCGACTA ACTTTACGGT ATCGATTGAA GCGGCAGAAG GCGTAACCAC TGGGATTTCG 
GCCCACGATC GCGCCGTAAC GGTAAAAGCA GCCGTGGCTA AAGATGCCAA GGCATCGGAT 
TTAGTTCAGC CGGGTCATAT CTTCCCATTA ATGGCGCAGG ACGGCGGCGT GTTAACCCGC 
GCAGGTCACA CTGAAGCGGG TTGTGATTTA GCCCGTTTAG CAGGGCTTGA GCCATCGGGG 
GTGATTGTTG AGATCCTCAA TGAAGACGGC ACTATGGCTC GTCGCCCTGA TTTAGAGATT 
TTCTCTGAAT TACATGGGAT TAAAATCGGC ACTATTGCGG CGCTTATCGA ATACCGCAAC 
ACCAAAGAAA CCACAGTCGT GCGCGAAGCT AAATGTAAAC TGCCGACCCG CTTTGGCGAG 
TTCGACATGG TGACCTTTAG GGACACTATC GACAATCAAC TACACTTTGC CTTAGTGAAG 
GGCGAGGTGA AGCCAGATTG TTTAGTGCGC GTACACTTAC AAAATACCTT CAACGATTTA 
CTCCACTCAG AGCGCGATCA GCAGCGCAGC TGGCCGCTTG AAAAAGCTAT GGAACGCATT 
TCTGCCGAAG GTGGTGTGTT GGTGTTGCTG GGCAATCAAG AGCATCCTTG TGAAATCCTC 
TCTAAAGTCA AAGCCTTTGA AGCTGAAGAT CAAGGTCAAG CGCCAGCCTC TGCAAAATGG 
CAAGGCACTT CGCGCCGTGT AGGTGTAGGC TCACAAATTC TGGCCAGCCT TGGGGTAACT 
AAAATGCGAC TCTTAAGTTC GCCTAAGCGT TATCATTCAC TCTCAGGTTT TGGTCTTGAA 
GTGACCGAGT ACGTGGCGGA GTAA
 
Protein sequence
MALHSIEEII EDIRQGKMVI LMDDEDRENE GDLIMAAELV TPEAINFMAK YGRGLICQTM 
TKARCQQLNL PLMVTNNNAQ FSTNFTVSIE AAEGVTTGIS AHDRAVTVKA AVAKDAKASD 
LVQPGHIFPL MAQDGGVLTR AGHTEAGCDL ARLAGLEPSG VIVEILNEDG TMARRPDLEI 
FSELHGIKIG TIAALIEYRN TKETTVVREA KCKLPTRFGE FDMVTFRDTI DNQLHFALVK 
GEVKPDCLVR VHLQNTFNDL LHSERDQQRS WPLEKAMERI SAEGGVLVLL GNQEHPCEIL 
SKVKAFEAED QGQAPASAKW QGTSRRVGVG SQILASLGVT KMRLLSSPKR YHSLSGFGLE 
VTEYVAE