Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1097 |
Symbol | |
ID | 4251065 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1288829 |
End bp | 1289485 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638117670 |
Product | riboflavin synthase subunit alpha |
Protein accession | YP_733234 |
Protein GI | 113969441 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0307] Riboflavin synthase alpha chain |
TIGRFAM ID | [TIGR00187] riboflavin synthase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0107827 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.803042 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTACTG GGATTATTGA GGCCGTTGGC ACGCTGCGAA AGCTTGAACG TAAAGGCGAT GATATTCGTT TGACGGTCGC CAGTGGCAAA CTGGATTTAA GCGATGTGCG TTTAGGCGAC AGTATCGCCA CCAATGGTGT GTGTTTGACT GTGGTTCAGC AATTAGCCGA TGGCTATGTG GCGGATGTGT CGGCTGAAAC TGTCAGTCTC ACAGGCTTTG CTAACTATAA AGTCGGCACT AAGGTTAATC TTGAAAAAGC CGTTACCCCG ACAACTCGCC TCGGCGGGCA TATGGTCAGC GGCCATGTGG ATGGCATTGC CACCGTAGAG CAGCGTCTTG CTCGTGGTCA AGCAATCGAA TTTTGGTTAG CGGCGCCTGC GGAGCTGGCT CGGTATATTG CTCATAAAGG TTCTATCACC ATCGATGGCG TGAGCCTGAC GGTAAACGAA GTCGATGGAC ACCGTTTCCG ATTAACCATA GTGCCCCATA CAGCGGGTGA AACCACGTTG GTAGATTTGA AAGCCGGCGA TAAGGTAAAT ATTGAAGTGG ATTTAATCGC CCGCTATTTA GAGCGTTTAA TGCGCTTTGA TACTAAAGAA ACCCAAGGCG GCGGGGTGAC CATGGAAATG TTAGCCCGTG CTGGCTTTGT GCGTTAG
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Protein sequence | MFTGIIEAVG TLRKLERKGD DIRLTVASGK LDLSDVRLGD SIATNGVCLT VVQQLADGYV ADVSAETVSL TGFANYKVGT KVNLEKAVTP TTRLGGHMVS GHVDGIATVE QRLARGQAIE FWLAAPAELA RYIAHKGSIT IDGVSLTVNE VDGHRFRLTI VPHTAGETTL VDLKAGDKVN IEVDLIARYL ERLMRFDTKE TQGGGVTMEM LARAGFVR
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