Gene Shewmr4_1097 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1097 
Symbol 
ID4251065 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1288829 
End bp1289485 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content50% 
IMG OID638117670 
Productriboflavin synthase subunit alpha 
Protein accessionYP_733234 
Protein GI113969441 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0307] Riboflavin synthase alpha chain 
TIGRFAM ID[TIGR00187] riboflavin synthase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0107827 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.803042 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTACTG GGATTATTGA GGCCGTTGGC ACGCTGCGAA AGCTTGAACG TAAAGGCGAT 
GATATTCGTT TGACGGTCGC CAGTGGCAAA CTGGATTTAA GCGATGTGCG TTTAGGCGAC
AGTATCGCCA CCAATGGTGT GTGTTTGACT GTGGTTCAGC AATTAGCCGA TGGCTATGTG
GCGGATGTGT CGGCTGAAAC TGTCAGTCTC ACAGGCTTTG CTAACTATAA AGTCGGCACT
AAGGTTAATC TTGAAAAAGC CGTTACCCCG ACAACTCGCC TCGGCGGGCA TATGGTCAGC
GGCCATGTGG ATGGCATTGC CACCGTAGAG CAGCGTCTTG CTCGTGGTCA AGCAATCGAA
TTTTGGTTAG CGGCGCCTGC GGAGCTGGCT CGGTATATTG CTCATAAAGG TTCTATCACC
ATCGATGGCG TGAGCCTGAC GGTAAACGAA GTCGATGGAC ACCGTTTCCG ATTAACCATA
GTGCCCCATA CAGCGGGTGA AACCACGTTG GTAGATTTGA AAGCCGGCGA TAAGGTAAAT
ATTGAAGTGG ATTTAATCGC CCGCTATTTA GAGCGTTTAA TGCGCTTTGA TACTAAAGAA
ACCCAAGGCG GCGGGGTGAC CATGGAAATG TTAGCCCGTG CTGGCTTTGT GCGTTAG
 
Protein sequence
MFTGIIEAVG TLRKLERKGD DIRLTVASGK LDLSDVRLGD SIATNGVCLT VVQQLADGYV 
ADVSAETVSL TGFANYKVGT KVNLEKAVTP TTRLGGHMVS GHVDGIATVE QRLARGQAIE
FWLAAPAELA RYIAHKGSIT IDGVSLTVNE VDGHRFRLTI VPHTAGETTL VDLKAGDKVN
IEVDLIARYL ERLMRFDTKE TQGGGVTMEM LARAGFVR