| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1096 |
|---|
| Symbol | |
|---|
| ID | 4251064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1287676 |
|---|
| End bp | 1288821 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638117669 |
|---|
| Product | diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase |
|---|
| Protein accession | YP_733233 |
|---|
| Protein GI | 113969440 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.169182 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.690835 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTGGT CAGAACTCGA TAACCAGATG ATGAGCCGAG CCATACAACT GGCTCGCAAA
GGATTTTATA CCACTCGCCC CAATCCCAGT GTGGGCTGCG TTATCGTAAA AGATAATCAG
ATTGTCGGTG AGGGTTATCA TCAAAAAGCT GGCGAGCCAC ATGCTGAGGT GCATGCACTG
CGGATGGCTG GCGAGCTTGC CCGTGGCGCG ACCGCCTATG TCACCTTAGA ACCTTGCAGC
CATTATGGCC GCACACCGCC GTGTGCCTTG GCACTGATTA ATATTGGTGT AAAACGAGTC
GTGGTGGCGG TTGAAGATCC CAATCCGCAG GTCGGTGGTC GCGGTATTCA AATGCTGCGC
GATGCGGGCA TTCAAGTGGA TGTCGGTTTG CACCGCGACG AAGCTTACGC TTTAAATCTT
GGTTTTATGA AGCGCATGGA ATCAGGCCTA CCTTGGGTGA CGGTAAAGCT TGCCGCGAGC
CTAGATGGTA AAACCGCGTT ATCAAACGGT GTGTCCAAAT GGATCACAGG CCCCGAAGCT
CGCCGCGATG TGCAGCGCTT ACGTTTACGC GCCTGCGCGC TAGTGACGGG GATTGACACT
GTGCTGGCCG ATGACCCTTC GCTTAATGTG CGTTACTCAG AGCTTGGCAG TCTTAGCTCA
CAATTGAGTG AAGCGCAGAT TTTACAACCG CTGCGGGTGA TATTAGACAG TCGTTGCCGG
ATGCCGATTA CGGCAGCCTT GCTTGCGATT GAATCGCCGA TGTTATTAGT CTCAACTGAG
CCTTACTCGC CAGCCTTTAT GGCGCAGTTG CCCGCCCATG TGACTTGTCT TCAATTACCG
GCGATTGATG GTCGAATCTC GCTGCCTGCA CTCTTAAGCT ATTTAGGCAA AAGCTGTAAT
CAGGTGCTTA TCGAAGCGGG CGCGACCTTA GCCGGCGCCT TTATCGGTGA CGGATTAGCC
GATGAATTAG TGTTGTATCA AGCGATGAAA ATCCTTGGCG CACAGGGACG TAATCTACTC
GAATTACCCG ATTATCAAAT GATGGCCGAT ATTCCGACCC TCAAACTGGT CGATGAGCGT
AAAGTGGGCG CGGATACGCG TTTCACCTTG AGGCTTACAT CCAATCCATC TTTAGCGAAT
AAGTGA
|
|---|
| Protein sequence | MNWSELDNQM MSRAIQLARK GFYTTRPNPS VGCVIVKDNQ IVGEGYHQKA GEPHAEVHAL
RMAGELARGA TAYVTLEPCS HYGRTPPCAL ALINIGVKRV VVAVEDPNPQ VGGRGIQMLR
DAGIQVDVGL HRDEAYALNL GFMKRMESGL PWVTVKLAAS LDGKTALSNG VSKWITGPEA
RRDVQRLRLR ACALVTGIDT VLADDPSLNV RYSELGSLSS QLSEAQILQP LRVILDSRCR
MPITAALLAI ESPMLLVSTE PYSPAFMAQL PAHVTCLQLP AIDGRISLPA LLSYLGKSCN
QVLIEAGATL AGAFIGDGLA DELVLYQAMK ILGAQGRNLL ELPDYQMMAD IPTLKLVDER
KVGADTRFTL RLTSNPSLAN K
|
|---|
| |