| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1087 |
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| Symbol | |
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| ID | 4250792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1275549 |
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| End bp | 1279220 |
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| Gene Length | 3672 bp |
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| Protein Length | 1223 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638117660 |
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| Product | type IV pilin biogenesis protein, putative |
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| Protein accession | YP_733224 |
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| Protein GI | 113969431 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTCGT GTTTATTTAC ATATCAATTC GAAAATCGAT TGGTATTCTC TCTTGCTCGT
ATTTCTTCGC TAATATCCCT TAACATTCGC CCACAAAACG TTCGTCATAC GTTAACGTCA
CTGTTTTCTC TTATTCTGTC GAGTGTAATT GTGAGTGCGG CCAGTTTATT TATGGCGCCG
ACTCACGCCG ATGACACTGA GCTTTATGTT TTCGAAGCGT CCGCCCGTAA TGGCTCGCGT
CCGCAGGTGC TGATTATCTT TGATAACTCG GGCAGCATGA GTAATCTCGC CTATGATGTC
GAGGCGCCCT ACGAGAATAA GCGCGCAGTA AATTATGCCC AATCGGGTAA TTTATTCTAT
AGCCGAGGTT CATCGGAAAA CGCGGCTGCG CCCAATCCTA ATTCAGGGCG GGAAAAACGT
AAGTTCAGTG GTGGACTCAA TGGCTGCGAA AGCTCATGGG AATATCTGAA TCGTTACGGC
ACCTTTACGG GTTTTTTTAG GGAATATGGT TTTTCGGGAA GCTCGGGATC TTGGAGAGAG
TTCTCAGAGC TTAACGGCAG TTCCATTTCC GCCGTCGATT GTTTTGAGGA TATTCAGGAA
AACAAGTTCG GTAACGCGGC AGGTGAAGCC CAAGGTTTAC CCGTGGACAG CCTAGGGACG
GCGAGCAAAC CGGTTCGTTA CACTGAGGCC AGTACTAGCT CATCAGACAA TGTAAAGTCC
GCGGCCAAGG CTAAGGCAGA AAAAACCGCG TTTGGTACCG GTAAAGTGGT TACCGTCTAT
ACCGAAGATT ACTTAAACTG GCTGCATGGT CCTAAAACTA GGGTCAATAA AACGCGACTA
GCCTTGGCTA AAGATGCGAT TGAAAGTGTG ATTTTAACCA CGCCGGGTGT GGATTTTGGC
CTAGCGATTT TTAATATGAA TGGCCCCTAT GATGGGCAGC GTGATGGCGG GCGGATTATC
TCTGGGATTA AGCCTATGTC CGCTGCAGCT AAAATTGATT TGCTTAAAGG GGTTAATGAT
ATTAACTACG CCCAAAATAC TCCCTTATGC GAAACCCTCT ATGAGGCGTA CCGTTATTTC
GGCGGGCAGA GTCAGTATTT TGGTGATGAT GACAGCGATT ATGACTATTT CGACCGCTGG
GGACGTTATT TGGGGACTTA CCAAGCGAGC AGAAACTCTT TTACCGATCC CGAAGCGTTA
GTCGTGGGGA CCAATAACTA TAACTCGCCC TTCAAACGTT GCCAAAATGA AGCCTATATC
ATCTATATCA CCGACGGTGA ACCCACGCTG GATAATGCGG CCGATGGTTT GGTTGAACAG
TTAACCAAAG GTGTTGGAAA ACATACCTCT CGCCCCGTCA GCTACCTCAG TGCGCTTTCA
GGCTGGATGA GAAACGAAGA TGTCAATCCT AATTCTGCGG GTAAACAAAC CGTTAGAACC
TTTACCATCG GTTTTAGTGA AGGTGCCGCC AGTGCCGAAC ATTTGCTGAA GCAGACCGCC
GAAAATGGCG GAGGTAAGTA TTTCGATGCG ACCGATGCCA GTAAATTACG CTCTTCATTA
CAAACGGCCC TGAACAATAT TCTCGAAAAA AATGCCAGCT TTACCTCTCC CTCGGTGGCA
AGTAATAACT TTAACCGAAC GCAAACCTTT GATTCCGCTT ATTACTCTAT GTTTTTGCCG
AACAAAGGGC CGAGATGGTT AGGCAATATT AAGAAATTCA AAGTCACCAG TAGTGGTGAT
GTTGTCGATA GCAAAGGCAA CAATGCGATA GGTGAAGATG GCAACATCAA AGCCGAGGCC
TGCTCCTATT GGACCTCGGC CGAAGAGTGT GGTGCGAGTG GCGATGGTAA CGATGTGAAG
CGGGGTGGAG TGCTAGGCGC AATGCAGCAG GCGGGTAGTC GCACCTTGTA CAGTAATTTA
GGCACGGGAT TAAGCCCGTT TACCCTGTCG AATGCATCTC GCAAAGCGGG GGGCGATGCA
CGTTTGGCCT TGTATATGGG GGTCGATGAA ACTGAGCTTA GCGAGCATTT TGATTGGGCC
AAGGGCATCG ATGTCGACAA TGACAAGAAT CAGGACCTCA GTGCCGCGAG TGGCGCAACC
CCCAATTGGC GCGCCGATAT TATGGGGGAT GCTTTACATT CCAAACCCTT AGCACTTAAT
TTTGGCTCTG AAGATCAGCC CGATATTCGG ATTATCGTGG GGACTAACCA TGGGTTCCTG
CATATGTTCA AGGATGAAGG CGATAGCGTG TCTGAGACTT GGGGTTTTAT CCCCTATGAG
TTGCTGCCGA ATTTTCGCGA TCTGAAGGCG AACGCGCCAA CGGGCGTGCA CTCGGTATAC
GGTATTGATG GCTCGCCAGT CGCTTACACC AAAATGCAGG GCAAACGTAT TGAAAAAGCG
TGGGTGTTTG TGGGGATGCG TCGTGGGGGA AATGCTTATT ATGCCCTCGA TATCACCTCC
CCCGATAATC CTACTTTTAT GTGGAGGATT GATGCCAGCT CACCGGGAAT GGGCGAATTA
GGTCAATCAT GGTCGACGCC TGTCGTCACC ACGATTCCGA GTGCCACTGG GGATAAACCC
GTGCTCATCT TCGGTGCGGG ATATACTCCA GCGACCAAGG ATGGCGCTGA GATTGGCAGT
GACGATAGCC AAGGCCGAGG CGTGTTTATT GTCGATGCCG AAACGGGGGC GTTAATCCAT
CAATTTGGGG GCAGTGGCGC AAACACCCAA CTGCCAGGGA TTGCCAACAG TATTCCGAGC
AGCGTTGCCG TGTTAGATGG TAATGGTGAT GGCCGAACGG ATAGGATCTA TGCCACAGAT
ACACAAGGGA ATGTGTGGCG AATGGACATG CCTACGGCAA ATACCTCGAC CTGGTCGGGA
TTTAAATTTG CCGCATTAGG GGATAGGAGT TCGGTGGCAA GTGACAGACG ATTCTTCTCC
GGCCCCACGG TCGCGCAGAC CATTATCACC AATACCTTCG AGTTGACTCA GGTGGTGAAT
GGGAAATCGA CCAAGACAGT GACGACACAG AATATTCCCT ACGATGCCGT AGTGGTGGGC
AGCGGTCACA GGGCAAAACC TAGCGATGTG TCCCGTTCGG ATATGTTTTT TGCCTTGCAA
GATAGGAACA TAGTAACTCA GTCATTCCAA GGTAAGCCTA ATCAAAAGCC TGTGCCGAGC
GCCTTAACCT TAAGTGACTT ATACGATGTG ACTACGGCGG CGCCAAGCAA CCAAGCTAGC
GAAATCGCCT TTGGCCAAAA ACGGGGTTGG TACTATGACT TCTCCCGTAA AGGTGAAAAG
AGTCTATCGT CAGCGACCAT AGTTCAGGGC GAGGTGTATT TCACCAGTTT TGTGCCTGGT
AGTGATGCTT CGGTGAACCA ATGTTTAAGT TCGGGGAAGG GCTACCTCTA TAAAAAGAAT
TTACACAAAG GCACGAATGG CTACAGAACC GATTTCTTAT ATGCCGGTGA ACTGGTTTTG
GATACGCCGC AATTGGTCAT CCCCCCGGCA GCGCAGCCTG ATGACCCCAA TGCTAAGGCT
CCCACTCTAG ATATGTTTTT GATTGGGATT GGTAAGGCAG TGCCTGAGGA GGCGACTTGT
GAGAGCGGTA ATCCTAAGTG TATTGGCAGT GGGCCTAAGG CAAATAAGAT TTACTACTAC
GTAGATCAAT AA
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| Protein sequence | MISCLFTYQF ENRLVFSLAR ISSLISLNIR PQNVRHTLTS LFSLILSSVI VSAASLFMAP
THADDTELYV FEASARNGSR PQVLIIFDNS GSMSNLAYDV EAPYENKRAV NYAQSGNLFY
SRGSSENAAA PNPNSGREKR KFSGGLNGCE SSWEYLNRYG TFTGFFREYG FSGSSGSWRE
FSELNGSSIS AVDCFEDIQE NKFGNAAGEA QGLPVDSLGT ASKPVRYTEA STSSSDNVKS
AAKAKAEKTA FGTGKVVTVY TEDYLNWLHG PKTRVNKTRL ALAKDAIESV ILTTPGVDFG
LAIFNMNGPY DGQRDGGRII SGIKPMSAAA KIDLLKGVND INYAQNTPLC ETLYEAYRYF
GGQSQYFGDD DSDYDYFDRW GRYLGTYQAS RNSFTDPEAL VVGTNNYNSP FKRCQNEAYI
IYITDGEPTL DNAADGLVEQ LTKGVGKHTS RPVSYLSALS GWMRNEDVNP NSAGKQTVRT
FTIGFSEGAA SAEHLLKQTA ENGGGKYFDA TDASKLRSSL QTALNNILEK NASFTSPSVA
SNNFNRTQTF DSAYYSMFLP NKGPRWLGNI KKFKVTSSGD VVDSKGNNAI GEDGNIKAEA
CSYWTSAEEC GASGDGNDVK RGGVLGAMQQ AGSRTLYSNL GTGLSPFTLS NASRKAGGDA
RLALYMGVDE TELSEHFDWA KGIDVDNDKN QDLSAASGAT PNWRADIMGD ALHSKPLALN
FGSEDQPDIR IIVGTNHGFL HMFKDEGDSV SETWGFIPYE LLPNFRDLKA NAPTGVHSVY
GIDGSPVAYT KMQGKRIEKA WVFVGMRRGG NAYYALDITS PDNPTFMWRI DASSPGMGEL
GQSWSTPVVT TIPSATGDKP VLIFGAGYTP ATKDGAEIGS DDSQGRGVFI VDAETGALIH
QFGGSGANTQ LPGIANSIPS SVAVLDGNGD GRTDRIYATD TQGNVWRMDM PTANTSTWSG
FKFAALGDRS SVASDRRFFS GPTVAQTIIT NTFELTQVVN GKSTKTVTTQ NIPYDAVVVG
SGHRAKPSDV SRSDMFFALQ DRNIVTQSFQ GKPNQKPVPS ALTLSDLYDV TTAAPSNQAS
EIAFGQKRGW YYDFSRKGEK SLSSATIVQG EVYFTSFVPG SDASVNQCLS SGKGYLYKKN
LHKGTNGYRT DFLYAGELVL DTPQLVIPPA AQPDDPNAKA PTLDMFLIGI GKAVPEEATC
ESGNPKCIGS GPKANKIYYY VDQ
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