Gene Shewmr4_1085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1085 
Symbol 
ID4250790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1272809 
End bp1273603 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content47% 
IMG OID638117658 
Producthypothetical protein 
Protein accessionYP_733222 
Protein GI113969429 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0391886 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.830979 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTTCA AGTCGCTAAT CAAGATTAGC CTTGTATTAC AGCTCTTAGG ATTATCCGCA 
CCCAGTTTAG CGGGGCGAGA TTTAACATTG GTGGCGACCA ATTACCCTCC CTTTTATAGC
AGTGAGTTAG CCGATCAAGG CGGTGTCGCC CTCGTGGTCA AAGAGGCTTT TAAACGTCGC
GGCTATAATG CCAGTGTCAA ATTCTATCCC TTTGCGCGGG CAGCCTTGCT AGTCAAAACT
GGCCAAGCCG ATGGCATTAT TGGCCTTTGG TATCGCAAAG AACGTGAGCA ATGGGCGCAC
TATTCCAATC CCATTCAGGC CGTACAGATT GTGTTCTATA AACGTAAGGA TAATCCCTTA
AGTTTTAGTC AATTAAGTGA GCTAAAGCCC TTCACCATTG GCATTGGCCG TGGCTACGCC
AATCCGCCCG AGATTGCCGC AGCAGAACTC ACCACTGAGG AAGGCAGTTC CGATGAGATG
AATCTTAAGA AATTGTTTCT AAAACGCATC GACTTAGTGC TAACTGGTTA CAACCTTGGC
CAATATTTAA TCAAGCAACA TGGCGATGAA TATCTCGATG CCCTTGAACA GGTTGGCGAG
CCCATAGCAA CTGAGGTATT CCATTTAGGG GTATCGTTAG CGATTGCCGA TCAGGCCACC
TTAGTCGATG AGTTTAATAA AGGATTGGAA AGCATGGCCC TGGATGGCCG CCTTGGCGCG
ATTTTAAGCC AATATCCGCA AATTCAATCC ACCTTAGATC CGATAGAGAA AATACGAACA
CAAGCACATC CTTAG
 
Protein sequence
MDFKSLIKIS LVLQLLGLSA PSLAGRDLTL VATNYPPFYS SELADQGGVA LVVKEAFKRR 
GYNASVKFYP FARAALLVKT GQADGIIGLW YRKEREQWAH YSNPIQAVQI VFYKRKDNPL
SFSQLSELKP FTIGIGRGYA NPPEIAAAEL TTEEGSSDEM NLKKLFLKRI DLVLTGYNLG
QYLIKQHGDE YLDALEQVGE PIATEVFHLG VSLAIADQAT LVDEFNKGLE SMALDGRLGA
ILSQYPQIQS TLDPIEKIRT QAHP