Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1085 |
Symbol | |
ID | 4250790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1272809 |
End bp | 1273603 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638117658 |
Product | hypothetical protein |
Protein accession | YP_733222 |
Protein GI | 113969429 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0391886 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.830979 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACTTCA AGTCGCTAAT CAAGATTAGC CTTGTATTAC AGCTCTTAGG ATTATCCGCA CCCAGTTTAG CGGGGCGAGA TTTAACATTG GTGGCGACCA ATTACCCTCC CTTTTATAGC AGTGAGTTAG CCGATCAAGG CGGTGTCGCC CTCGTGGTCA AAGAGGCTTT TAAACGTCGC GGCTATAATG CCAGTGTCAA ATTCTATCCC TTTGCGCGGG CAGCCTTGCT AGTCAAAACT GGCCAAGCCG ATGGCATTAT TGGCCTTTGG TATCGCAAAG AACGTGAGCA ATGGGCGCAC TATTCCAATC CCATTCAGGC CGTACAGATT GTGTTCTATA AACGTAAGGA TAATCCCTTA AGTTTTAGTC AATTAAGTGA GCTAAAGCCC TTCACCATTG GCATTGGCCG TGGCTACGCC AATCCGCCCG AGATTGCCGC AGCAGAACTC ACCACTGAGG AAGGCAGTTC CGATGAGATG AATCTTAAGA AATTGTTTCT AAAACGCATC GACTTAGTGC TAACTGGTTA CAACCTTGGC CAATATTTAA TCAAGCAACA TGGCGATGAA TATCTCGATG CCCTTGAACA GGTTGGCGAG CCCATAGCAA CTGAGGTATT CCATTTAGGG GTATCGTTAG CGATTGCCGA TCAGGCCACC TTAGTCGATG AGTTTAATAA AGGATTGGAA AGCATGGCCC TGGATGGCCG CCTTGGCGCG ATTTTAAGCC AATATCCGCA AATTCAATCC ACCTTAGATC CGATAGAGAA AATACGAACA CAAGCACATC CTTAG
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Protein sequence | MDFKSLIKIS LVLQLLGLSA PSLAGRDLTL VATNYPPFYS SELADQGGVA LVVKEAFKRR GYNASVKFYP FARAALLVKT GQADGIIGLW YRKEREQWAH YSNPIQAVQI VFYKRKDNPL SFSQLSELKP FTIGIGRGYA NPPEIAAAEL TTEEGSSDEM NLKKLFLKRI DLVLTGYNLG QYLIKQHGDE YLDALEQVGE PIATEVFHLG VSLAIADQAT LVDEFNKGLE SMALDGRLGA ILSQYPQIQS TLDPIEKIRT QAHP
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