| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1084 |
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| Symbol | |
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| ID | 4250789 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 1271497 |
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| End bp | 1272609 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638117657 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_733221 |
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| Protein GI | 113969428 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0120074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA CCATAATAGC CATTGCCTTA GTTGCTGCGG TTGCCGCCGC TGTGAGTTTT
AGTGATGTAC TGCAAGCGGC CAAACCCGAA AGCGCGCCCC ATTTAATGCG TACAGTACCT
GTGGTTACCG GAGAAGTGGT TGAACATCCG CTAACACAAT CGATTTCACT GATTGGTAAG
CTCGCTGCCG ATCGCGCTGT GGTAATCGCG CCGCAAGTCA CAGGCAAAAT TAAGCAAATC
GCAGTGACAT CAAACCAAGC GGTCAAGAAA GGCCAGCTGC TTATCGAACT CGATGACATG
AAGGCCCAAG CTGCGGTGGC CGAAGCCAAT GCCTTTTTAA ATGATGAAAC CCGTAAACTC
AGGGAATTTG AAAAACTCAT CAGCCGCAAC GCCATCACCC AAACAGAAAT TGATGCGCAA
AAGGCCAGTG TCGATATCGC CAGAGCACGA CTCGCCTCGG CGCAGGCAGA CTTACACTAT
CATTCATTGA TCGCCCCCTT TGCCGGCAAA ACCGGGCTGA TTAACTTCAG CGAAGGTAAA
ATGGTCAGCA TAGGCACTGA GCTGATGACC TTGGATGACT TATCCAGCAT GCGACTCGAC
CTACAGGTGC CCGAGCATTT TCTGTCACAG TTAAGTATTG GTATGCCAGT CTCGGCCACC
AGCCGCGCTT GGCCAGGTGA AACCTTTATC GGCAAAGTGA TCGCTATCGA TCCCCGCGTG
AATGAAGAAA CCTTAAACTT GAAGGTCCGC GTACAATTTG AAAACGCGAA AAACCGCTTA
AAACCCGGCA TGATGATGTC ATCGACCATC ACCTTCCCAC CGATTTCCGC CCCAATTGTG
CCAGTACAAG CCTTAGAATA TTCAGGCACT AAGCGCTATG TGTATGTGGT TGGCGAGGAT
AAAATCGCCC ATCGCACCGA AGTGGTTTTA GGCGCACGTG TGGGTGATCA AGTGCTTATC
GATTCTGGCC TCAAGATTGG CGACAAAGTG GTAGTGCAAG GACTAGTGAA TATGCGCGAT
GGCTTAAAGA TCAATGAAGT CGTGCTCGAA GCCAATAACA AGACTCAAGG TCCTGCCGCT
AAATCAGACG TCAACACCGC GGAGATGAAA TAA
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| Protein sequence | MKKTIIAIAL VAAVAAAVSF SDVLQAAKPE SAPHLMRTVP VVTGEVVEHP LTQSISLIGK
LAADRAVVIA PQVTGKIKQI AVTSNQAVKK GQLLIELDDM KAQAAVAEAN AFLNDETRKL
REFEKLISRN AITQTEIDAQ KASVDIARAR LASAQADLHY HSLIAPFAGK TGLINFSEGK
MVSIGTELMT LDDLSSMRLD LQVPEHFLSQ LSIGMPVSAT SRAWPGETFI GKVIAIDPRV
NEETLNLKVR VQFENAKNRL KPGMMMSSTI TFPPISAPIV PVQALEYSGT KRYVYVVGED
KIAHRTEVVL GARVGDQVLI DSGLKIGDKV VVQGLVNMRD GLKINEVVLE ANNKTQGPAA
KSDVNTAEMK
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