Gene Shewmr4_1077 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1077 
Symbol 
ID4250782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1261751 
End bp1264048 
Gene Length2298 bp 
Protein Length765 aa 
Translation table11 
GC content48% 
IMG OID638117650 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_733214 
Protein GI113969421 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTAAATA GTTTCCGTGC TCGACTGATT TTAGTTTTCT TTACTGTGCT GACCCTAGTG 
CAGTTAGCCA CGGCATTTTC AGTGTTGACG GCAACACAGA GAGATAACTT TTTACAGCAA
CAAAAGAGCC TTGAAATCGG CGCGAATGTG TTTCTCGAAG TGTTGTCGAA TCGCGGTGCT
CAACTCAGTC AAAGCTTATC TGTGCTCAGC GCCGATTTTG GTTTTAAGCG CGCGATTGCG
ACCAGAGAGC AAGAAACGAT AGCGTCGGTA TTATCCAATC ATGGTGCCCG TATCGGTGCA
GATGCAGCCA TATTGTTGTC ACCCAAGGGG GAACTGTTAA CCTCAAGCCT GCCAGGGCTT
ACGCAGGATG ATATTCAATC CCTATTTGAA CTGGCCACCA GCAATACCAA TGCCTTGGCG
ATTCTCGATT TTGACCATGC GAGTTATCAG TTTGTCCTTC AACCAGTCAA GGCGCCAACT
CTGATAGCCT GGGTTGGTAT GGGCTTTTTG TTAGATGAAA AAGTGGCTAG CCAAGCCAAA
GCCATCACAG GGATTGATGT TAGCTTTGTT AATCAGACCA ATGGCAGGAC TGAAATCGCC
TCCACCTTAT CCAGCGCCGA ACAGCAGAGT GTGCTTGCGC AGAAAAACCG CTTCCCCAGC
CTGTTAACTA TGCCCAGCGA GTATATTCCT GCGGACTACT TATCCATGGC AATCAAGCTA
TATGAGCATA ATGGTCGCCA GTTGGCGCTG CTGCACCAGT CAAACCTCAA GTGGCAGCAA
AGTTATCTGC ATTTACGCAA TAACATGCTG CTGATCTTTG CGTTGACGCT GGCATTGGCG
ATTGCCATTG CCATTTGGTT GTCGGGCAGT TTGACTGAGC CCGTTCATCG ATTGGTGCAG
TATGCCCGTA AAATTGGTCA GGGACTGCAG CCTGAGAGCA TTCAGGGGGC GCCTGCGGAA
TTGCGGGTAT TGGCCAACAG TTTGTCTTTG ATGCGGGAGG ATATTGAGGC GCGCGAAAAG
GATTTGCTGT ATCAGTCGCG CCACGACAGT TTGACAGGCT TGCTGAATCG TTTCGCGGCA
AAACAGCATT TAACCGATCT TAACCAAGAT CTCTCTGGCA CTATCGTATT GCTGGATATC
AAGCATTTTC GCCATATCAA CGACATTATC GGTTTTGCTA ACGCCGATAG CTTATTGCTG
CTGTTTGCCC GCCGTTTGGA ACAGCTGGCG CCCACAGCCG ATATGCTGGC ACGATTGGAT
GGTGATTCGT TTTTGCTCTT GTATCGCCAA GGAATTGGGG GCGATCAATT ACTGAAATTC
TTGGATATGC TAGAAGCTCC CTTTCCTATC CAAGGTTCCA ATATTTCGCT GACGGTGCGA
GCAGGGCTGC TCGAAATTGA TGCCAATGGT GCCGACATTG ATGTGTTGCT GCGCCGCGCC
GAAATTGCCC TCAACCAGGC CTGCCTTCAG GAACTGCGAA TCGTTAGTTA TCGTGAGGGC
GACGATGAAA AGTACCAGCG AGAACTCACA CTTATCCGTG ATTTGCCTAT TGGTTTGGCG
CAGGACCAGC TCTATTTGGT GTTTCAGCCC AAGGTTAATT TGCCGCTCAA TCAATGTACT
GGTGCCGAAG CACTTATCCG TTGGCAACAT CCTACTCTGG GTTTTATCCC GCCGGATGAG
TTTATTCAAC TCGCTGAAAA CTCTGGCAAC ATTGATATTG TCAGCCAATG GGTATTGAAG
CAGGCCATCA AACAGTTGGT GACATGGCAG CAGCAGGGCC TAGCGCTGAA GTTGGCGATT
AACCTGTCTG CCCACGATTT ACTGGATACT CGTTTACCAA ATCAAATTGC CAACTTGTTA
AAGGACAATC ATCTGCAACC CGGTGCACTC TGCATCGAGG TCACCGAAGG CGCCGTGATG
AAAGATGCGC AAACCGTTGT GGGGGTCTTG CAACGATTCC GCGATATGGG GGTCTCGGTT
GCGATTGATG ATTTTGGCAC CGGACATTCA TCACTGGCGT ATTTGAAATT ATTACCCGTT
GATGAAGTGA AGATTGATCG TAGCTTTATC CAGAATATGC ACTTGAACAG TCAGGATGCC
ATGATAGTCA ATACCAGCAT TCAATTGATC CATGGCCTCG GTTTTAGCGT TGTGGCTGAA
GGTGTTGAAG AGCGAGAAGG TGTTGATATT CTTCGTCATC TCAACTGCGA TCTGATCCAG
GGCTATGTGT ATTCCAAGCC GTTAAAAGCG GCTGAGTTTG ACCAGTGGTT TGAAGCATTT
AATAGTAGCA GCAAATAA
 
Protein sequence
MLNSFRARLI LVFFTVLTLV QLATAFSVLT ATQRDNFLQQ QKSLEIGANV FLEVLSNRGA 
QLSQSLSVLS ADFGFKRAIA TREQETIASV LSNHGARIGA DAAILLSPKG ELLTSSLPGL
TQDDIQSLFE LATSNTNALA ILDFDHASYQ FVLQPVKAPT LIAWVGMGFL LDEKVASQAK
AITGIDVSFV NQTNGRTEIA STLSSAEQQS VLAQKNRFPS LLTMPSEYIP ADYLSMAIKL
YEHNGRQLAL LHQSNLKWQQ SYLHLRNNML LIFALTLALA IAIAIWLSGS LTEPVHRLVQ
YARKIGQGLQ PESIQGAPAE LRVLANSLSL MREDIEAREK DLLYQSRHDS LTGLLNRFAA
KQHLTDLNQD LSGTIVLLDI KHFRHINDII GFANADSLLL LFARRLEQLA PTADMLARLD
GDSFLLLYRQ GIGGDQLLKF LDMLEAPFPI QGSNISLTVR AGLLEIDANG ADIDVLLRRA
EIALNQACLQ ELRIVSYREG DDEKYQRELT LIRDLPIGLA QDQLYLVFQP KVNLPLNQCT
GAEALIRWQH PTLGFIPPDE FIQLAENSGN IDIVSQWVLK QAIKQLVTWQ QQGLALKLAI
NLSAHDLLDT RLPNQIANLL KDNHLQPGAL CIEVTEGAVM KDAQTVVGVL QRFRDMGVSV
AIDDFGTGHS SLAYLKLLPV DEVKIDRSFI QNMHLNSQDA MIVNTSIQLI HGLGFSVVAE
GVEEREGVDI LRHLNCDLIQ GYVYSKPLKA AEFDQWFEAF NSSSK