Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1077 |
Symbol | |
ID | 4250782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1261751 |
End bp | 1264048 |
Gene Length | 2298 bp |
Protein Length | 765 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638117650 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_733214 |
Protein GI | 113969421 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTAAATA GTTTCCGTGC TCGACTGATT TTAGTTTTCT TTACTGTGCT GACCCTAGTG CAGTTAGCCA CGGCATTTTC AGTGTTGACG GCAACACAGA GAGATAACTT TTTACAGCAA CAAAAGAGCC TTGAAATCGG CGCGAATGTG TTTCTCGAAG TGTTGTCGAA TCGCGGTGCT CAACTCAGTC AAAGCTTATC TGTGCTCAGC GCCGATTTTG GTTTTAAGCG CGCGATTGCG ACCAGAGAGC AAGAAACGAT AGCGTCGGTA TTATCCAATC ATGGTGCCCG TATCGGTGCA GATGCAGCCA TATTGTTGTC ACCCAAGGGG GAACTGTTAA CCTCAAGCCT GCCAGGGCTT ACGCAGGATG ATATTCAATC CCTATTTGAA CTGGCCACCA GCAATACCAA TGCCTTGGCG ATTCTCGATT TTGACCATGC GAGTTATCAG TTTGTCCTTC AACCAGTCAA GGCGCCAACT CTGATAGCCT GGGTTGGTAT GGGCTTTTTG TTAGATGAAA AAGTGGCTAG CCAAGCCAAA GCCATCACAG GGATTGATGT TAGCTTTGTT AATCAGACCA ATGGCAGGAC TGAAATCGCC TCCACCTTAT CCAGCGCCGA ACAGCAGAGT GTGCTTGCGC AGAAAAACCG CTTCCCCAGC CTGTTAACTA TGCCCAGCGA GTATATTCCT GCGGACTACT TATCCATGGC AATCAAGCTA TATGAGCATA ATGGTCGCCA GTTGGCGCTG CTGCACCAGT CAAACCTCAA GTGGCAGCAA AGTTATCTGC ATTTACGCAA TAACATGCTG CTGATCTTTG CGTTGACGCT GGCATTGGCG ATTGCCATTG CCATTTGGTT GTCGGGCAGT TTGACTGAGC CCGTTCATCG ATTGGTGCAG TATGCCCGTA AAATTGGTCA GGGACTGCAG CCTGAGAGCA TTCAGGGGGC GCCTGCGGAA TTGCGGGTAT TGGCCAACAG TTTGTCTTTG ATGCGGGAGG ATATTGAGGC GCGCGAAAAG GATTTGCTGT ATCAGTCGCG CCACGACAGT TTGACAGGCT TGCTGAATCG TTTCGCGGCA AAACAGCATT TAACCGATCT TAACCAAGAT CTCTCTGGCA CTATCGTATT GCTGGATATC AAGCATTTTC GCCATATCAA CGACATTATC GGTTTTGCTA ACGCCGATAG CTTATTGCTG CTGTTTGCCC GCCGTTTGGA ACAGCTGGCG CCCACAGCCG ATATGCTGGC ACGATTGGAT GGTGATTCGT TTTTGCTCTT GTATCGCCAA GGAATTGGGG GCGATCAATT ACTGAAATTC TTGGATATGC TAGAAGCTCC CTTTCCTATC CAAGGTTCCA ATATTTCGCT GACGGTGCGA GCAGGGCTGC TCGAAATTGA TGCCAATGGT GCCGACATTG ATGTGTTGCT GCGCCGCGCC GAAATTGCCC TCAACCAGGC CTGCCTTCAG GAACTGCGAA TCGTTAGTTA TCGTGAGGGC GACGATGAAA AGTACCAGCG AGAACTCACA CTTATCCGTG ATTTGCCTAT TGGTTTGGCG CAGGACCAGC TCTATTTGGT GTTTCAGCCC AAGGTTAATT TGCCGCTCAA TCAATGTACT GGTGCCGAAG CACTTATCCG TTGGCAACAT CCTACTCTGG GTTTTATCCC GCCGGATGAG TTTATTCAAC TCGCTGAAAA CTCTGGCAAC ATTGATATTG TCAGCCAATG GGTATTGAAG CAGGCCATCA AACAGTTGGT GACATGGCAG CAGCAGGGCC TAGCGCTGAA GTTGGCGATT AACCTGTCTG CCCACGATTT ACTGGATACT CGTTTACCAA ATCAAATTGC CAACTTGTTA AAGGACAATC ATCTGCAACC CGGTGCACTC TGCATCGAGG TCACCGAAGG CGCCGTGATG AAAGATGCGC AAACCGTTGT GGGGGTCTTG CAACGATTCC GCGATATGGG GGTCTCGGTT GCGATTGATG ATTTTGGCAC CGGACATTCA TCACTGGCGT ATTTGAAATT ATTACCCGTT GATGAAGTGA AGATTGATCG TAGCTTTATC CAGAATATGC ACTTGAACAG TCAGGATGCC ATGATAGTCA ATACCAGCAT TCAATTGATC CATGGCCTCG GTTTTAGCGT TGTGGCTGAA GGTGTTGAAG AGCGAGAAGG TGTTGATATT CTTCGTCATC TCAACTGCGA TCTGATCCAG GGCTATGTGT ATTCCAAGCC GTTAAAAGCG GCTGAGTTTG ACCAGTGGTT TGAAGCATTT AATAGTAGCA GCAAATAA
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Protein sequence | MLNSFRARLI LVFFTVLTLV QLATAFSVLT ATQRDNFLQQ QKSLEIGANV FLEVLSNRGA QLSQSLSVLS ADFGFKRAIA TREQETIASV LSNHGARIGA DAAILLSPKG ELLTSSLPGL TQDDIQSLFE LATSNTNALA ILDFDHASYQ FVLQPVKAPT LIAWVGMGFL LDEKVASQAK AITGIDVSFV NQTNGRTEIA STLSSAEQQS VLAQKNRFPS LLTMPSEYIP ADYLSMAIKL YEHNGRQLAL LHQSNLKWQQ SYLHLRNNML LIFALTLALA IAIAIWLSGS LTEPVHRLVQ YARKIGQGLQ PESIQGAPAE LRVLANSLSL MREDIEAREK DLLYQSRHDS LTGLLNRFAA KQHLTDLNQD LSGTIVLLDI KHFRHINDII GFANADSLLL LFARRLEQLA PTADMLARLD GDSFLLLYRQ GIGGDQLLKF LDMLEAPFPI QGSNISLTVR AGLLEIDANG ADIDVLLRRA EIALNQACLQ ELRIVSYREG DDEKYQRELT LIRDLPIGLA QDQLYLVFQP KVNLPLNQCT GAEALIRWQH PTLGFIPPDE FIQLAENSGN IDIVSQWVLK QAIKQLVTWQ QQGLALKLAI NLSAHDLLDT RLPNQIANLL KDNHLQPGAL CIEVTEGAVM KDAQTVVGVL QRFRDMGVSV AIDDFGTGHS SLAYLKLLPV DEVKIDRSFI QNMHLNSQDA MIVNTSIQLI HGLGFSVVAE GVEEREGVDI LRHLNCDLIQ GYVYSKPLKA AEFDQWFEAF NSSSK
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