| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1073 |
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| Symbol | |
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| ID | 4250778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1255040 |
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| End bp | 1256278 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638117646 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_733210 |
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| Protein GI | 113969417 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000967621 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGTA ACCAACCTTT ACGGATATTG ATGTTGACTG CCGTGGCGGC GTTTGTCCTT
TCGGCCTGTG GTGAACCCGA AGCCCAGCAG GGGCAAGCAC CGGGGGCACC TAAGGTCGAT
GTCGCGCAGG TATTGCATGA GCGCGTTACC GAGTGGGATG AATTTACTGG CCGTTTGCAG
GCGCCAGAAA GTGTGACCTT AGTGCCACGC GTGTCTGGCT ATATTGCCTC GGTCAACTTT
AAAGAAGGCG CCTTAGTGAA AAAAGGCGAT GTGCTATTCC ATATCGATGC GAGTGTGTTT
GAAGCGGAAG TGGCCCGGTT AAAAGCAGAT CTTGCTAGCG CGCTCTCTGC TGAGCAACTG
GCCACTAACG ACTTAGAACG TGCCCGCAAA CTCTTTGCCC AAAAGGCGGT ATCTGCAGAA
TTACTCGATA CCCGCGAGTC TAACAAACGC CAAACCACGG CGGCCGTAGC CTCTGTAAAA
GCGGCGCTGC TGCGCGCCGA GCTGGACTTA GATTACACCC AAGTGCGCGC ACCGATTGAT
GGCCGCGCCT CCTACGCCAA TGTCACCGCG GGTAACTATG TGTCTGCGGG GCAGAGTGTG
TTAACCAGCT TAGTGTCGAC AGCCAGCATG TATGCCTACT TCGATGTGGA TGAGCAAACC
TATCTGAAAT ACGTCAAGTT AACCGCCGAG AAAAAGCGTA AAGACCCTCG TGCTGGCGAC
AATCCCGTGT ATATGGCACT GGCCAACGAG CGCGAATATC AACACATAGG CCTAGTGGAC
TTTGTCGATA ATTCGATGGA CAGACAGACG GGCACTATTC GAGTACGTGC CACGTTTAGC
AATGAAGACA ACAGCTTGCT CCCTGGTCTG TTCGCCAGAT TACGTACCGC CGGTAGCGGC
GCCTACGACG GCATTTTAAT CGACGATAAA GCCGTGGGCA CGGATCTGAA CAATAAGTTC
GTGTTAGTGG TGGCAAACGA TGGCACTGTG GAGTATCGCG GCGTCACCCT AGGTGAAAAA
GTTCAAGGTT TACGTATTGT TAAGCAAGGT TTAGCGGCAG ACGACAAAAT CGTCGTCAAT
GGCATGCAAA GGGTTCGTCC TAAGATGCAA ATTGAGCCAC ACCTGGTTGA TATGGCCGAC
AGCGAACAGC TAGAGGCGCT TCGTCAAGCT CAATTACTGC TTGATAAACA TCAAGAAAAT
ATCACCACCC CAGACGTTGA AGTAGCGAGC CGCGGTTAA
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| Protein sequence | MKSNQPLRIL MLTAVAAFVL SACGEPEAQQ GQAPGAPKVD VAQVLHERVT EWDEFTGRLQ
APESVTLVPR VSGYIASVNF KEGALVKKGD VLFHIDASVF EAEVARLKAD LASALSAEQL
ATNDLERARK LFAQKAVSAE LLDTRESNKR QTTAAVASVK AALLRAELDL DYTQVRAPID
GRASYANVTA GNYVSAGQSV LTSLVSTASM YAYFDVDEQT YLKYVKLTAE KKRKDPRAGD
NPVYMALANE REYQHIGLVD FVDNSMDRQT GTIRVRATFS NEDNSLLPGL FARLRTAGSG
AYDGILIDDK AVGTDLNNKF VLVVANDGTV EYRGVTLGEK VQGLRIVKQG LAADDKIVVN
GMQRVRPKMQ IEPHLVDMAD SEQLEALRQA QLLLDKHQEN ITTPDVEVAS RG
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