Gene Shewmr4_1062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1062 
Symbol 
ID4250767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1244587 
End bp1245123 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content50% 
IMG OID638117635 
Productsterol-binding domain-containing protein 
Protein accessionYP_733199 
Protein GI113969406 
COG category[I] Lipid transport and metabolism 
COG ID[COG3154] Putative lipid carrier protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCTG TTTTTTCAGC TAATCTTGCA AAACAACTGC TCGAACTCAC CCCAAAACTG 
ATCCGTTTGC CACTCTCCAA AGTGCCCTTT AGCCTCAAGG CCAAGGTGCT TAGCCAACTC
TTAACACAGC TGCTGGCGCC GCAGGCCGAA GATGGCGAGT TAGCTTTCTT GGCGGACAAG
TGGGTTGCGA TTCGGGTTGA AGATTTAAAT CTGTATTTTG AAGTGAGTTT CGATGGCCGT
TGGCAGGTGC GTGAGCTGAC CGATGCCCAG GTCAGCTTTA GTGCCAATTC CGCCGAGCTC
TTATTGGTCG CTGCGGCAAA AGAAGACCCT GATACACTGT TTTTCCAACG TAAACTGAGC
ATTGAAGGCG ATACCGAGTT AGGGCTTGAG GTGAAAAATC TGCTGCTGAG TATCGAGTTT
GCCAGCCTGC CGACACCCAT TCGCTTAAGC GTTGAAAAGC TGGCCGATGC CATTGTGCGT
TTGCAGCTTG AGGCAAAACC GACGGTGATT TTGGCTAAAT CCCCAAGCTT AAGCTGA
 
Protein sequence
MSAVFSANLA KQLLELTPKL IRLPLSKVPF SLKAKVLSQL LTQLLAPQAE DGELAFLADK 
WVAIRVEDLN LYFEVSFDGR WQVRELTDAQ VSFSANSAEL LLVAAAKEDP DTLFFQRKLS
IEGDTELGLE VKNLLLSIEF ASLPTPIRLS VEKLADAIVR LQLEAKPTVI LAKSPSLS