Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1052 |
Symbol | |
ID | 4251125 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1231148 |
End bp | 1232326 |
Gene Length | 1179 bp |
Protein Length | 392 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638117625 |
Product | trimethylamine-N-oxide reductase c-type cytochrome TorC |
Protein accession | YP_733189 |
Protein GI | 113969396 |
COG category | [C] Energy production and conversion |
COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
TIGRFAM ID | [TIGR02162] trimethylamine-N-oxide reductase c-type cytochrome TorC |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.653719 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTGGT TAATCAACCT CTGGCGCACA CTAAACAAAC CCACAAAAGC TCTCACCTTA GGCGCTGTCA GCATCAGTGC TTTTATCATG GGCATCATCT TCTGGGGCGG ATTTAACACC GCACTGGAAG CCACCAACAC CGAAGCCTTC TGTATTAGCT GCCACAGTAT GGAAAGCAAG CCTTACCAAG AGTTACAGGA AACAGTGCAT TGGTCGAATC ACTCTGGCGT GCGCGCTACC TGCCCCGACT GCCACGTGCC CCACAACTGG AGCCGTAAGA TTGCCCGTAA GATGGAAGCT TCGCACGATG TTTGGGGCTG GTTATTCAAC ACGGTCAACA CCCCTGAAAA ATTTGAAGCT AAACGCCTCG AAATGGCGAG CCGCGAATGG AAACGTTTCG ATCGCGACAA TTCTCTGGCC TGTAAGAATT GCCACAACTA CAACTCGATG AAGTGGGAAA GCATGTCACC ACTGGCGCAA AAACAGATGA AACGCGCCGC CGAAATCGAC CAAAGCTGTA TCGATTGCCA CAAAGGCATT GCCCACCATT TACCTGAAAT GGGCACGGCC CGCGCACCCG AACTCATCGC CGAAGTGGGC GCTGGCGTCA GTTCAGTCGA AACCAACCAA ACCTACTACA GCGCCCTGAC TAAGCCACTG TTCTTTAGTG AAAAAGGTGA CGTTGAAGCC GGTACCTTAA ACGTAGCCAC TAAAGTCAAA GTGCTCGAAA CCCAAGGTAA GCGCATCAAA ATTGGCATCG ATGGCTGGCG TAAGAAAATC GGTGCAGGCC GCGTGATCTA CATGGACTTT GGGGTAAACA TTCTGTCGGC GCAGTTAAGC AAAGATGCCG CCGAAACCGA AGGTGTTATC CAAACCTTTG AAGAGAAAGA AGACCCAATG ACAGGCCTGA AATGGCAACG GGTTGAAGCC CAAATCTGGA CCGATAAGGA TTACCTGCTC ACCGAGCTGC AACCACTCTG GGGCTATGCC CGCGACACGT TCCGCTCAAG CTGTAGTGTG TGCCACACCC AGCCAGATGA AGCGCATTTC GATGCCAATA CCTGGCCAGG CATGTTCCAA GGCATGTTGG CCTTCGTGAA CATGGATCAA GACACCCAAG CGCTAGTGCA GAAATACCTG CAGGAACATT CGTCAACCTT CGTGAAAAAA GAGCACTAA
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Protein sequence | MKWLINLWRT LNKPTKALTL GAVSISAFIM GIIFWGGFNT ALEATNTEAF CISCHSMESK PYQELQETVH WSNHSGVRAT CPDCHVPHNW SRKIARKMEA SHDVWGWLFN TVNTPEKFEA KRLEMASREW KRFDRDNSLA CKNCHNYNSM KWESMSPLAQ KQMKRAAEID QSCIDCHKGI AHHLPEMGTA RAPELIAEVG AGVSSVETNQ TYYSALTKPL FFSEKGDVEA GTLNVATKVK VLETQGKRIK IGIDGWRKKI GAGRVIYMDF GVNILSAQLS KDAAETEGVI QTFEEKEDPM TGLKWQRVEA QIWTDKDYLL TELQPLWGYA RDTFRSSCSV CHTQPDEAHF DANTWPGMFQ GMLAFVNMDQ DTQALVQKYL QEHSSTFVKK EH
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