| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1049 |
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| Symbol | |
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| ID | 4251122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1224605 |
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| End bp | 1227658 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638117622 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_733186 |
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| Protein GI | 113969393 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR02956] TMAO reductase sytem sensor TorS |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGCCTT TATCTTTATC GCGAAGTAGT TTAACCGGCA GACTCATGCT CGCCTTCGGT
GTGCTTGGGG TATTGCTGTT GCTACTGGTT AGCTTAGGTA GCCTGAGTTT GCATTGGCTC
AAACAGGCCG ACAGTTATCT GTATGAAGAA TCCTTACCCG CCTCCCAAGC CGCGCGCCAA
TTAGTGCAGG CTTCTAATGC CTTATCCGAT GGTGTGACCC AATTAGGCCA AGTGGAGGAC
GAGCGGCAGC GGGAATTTAT CGGCCGTAAG CTCAGCCTTG AAAGCGCCAC AATGTTAAAT
AGCATCAAAG TGTTACTAAC ATTGGATGTG AACGAAGATA ATCATTTATC CGTATTAGCA
GGGCAAATCA TCGAGCAACT AACCTTATTG GGTAAGAGTG TCGGCCAGCG CATTACCTTA
GGCGATGAGT TACAGCTTAG GGCCCGCGAA TTATCGGTTG CCGCAGGTCA TGCCTCTGAA
TTATTGCAAT CCGAATTGGC GGTCGTCGAC TCGGCGATTT TGGCAAAACT CAGCCAATCC
TATCCGGATA TGGCGGGGGA TAAACGCAGT GGCCAATTGC TCGATGATGT GATTGAGCGA
GAGTTAGATG TGCAGGAGCA GCTCAACCGC GCACTCAAGT TAGTGCATCA AATTGCGCTG
CTCAGTCAGT TATTTGAGGC ATCAGAATTA CAGTCCGAGC TACAGTTGAG TGTTCCCCGT
TTATTGGCCA CCTTTGCCAG CACTACGCCT TCCCATCCGG CGGCGCAGAG TAAACCCGTA
CTCGGAACGG CAATCGAGCA GGCATCGAGC GCGGTCACAC AGCCGCCAAG GGGTGATGTT
GGCATCGATT TAATGGCGCT CACCACAGTA TCTGAGCTTA TTCGCGATCC CGGCAGGCTC
AAGGCGCTAA AGGCGGAGCT GGCAATCCTT CTTCATACCC CAAAAATCAT TAAATTACAG
CGAGAACTGA GCCAAAGCCT GCAGCGCCAA CAGCGGCAGC AACAGGAGTT AGCGGAAAAA
CTCTATAGCC TCAACACGCT GGTGGACAGT GCGCTTAATC AACAGCAGCA GCGGGCAGAG
CTTGCACGTA GCGATTATTT AATGCAGTTG TCCTACGCCC GTTTGGGGCT GTGGGGCACG
GGCATCTTAA TGTTGGTGAT CATCGGTGTG GTGGTTTACC GGGTGATCTA TCGCGGCATT
GCCCTTAGAT TAAATCAGGC GACCGAAGCC ATGTCGCGCT TAAGTTTAGG GGACACCAAT
GTGAGCCTCG ATGCCCACGG CGATGATGAA TTAACCGCCA TGGCCAATGC TATCGAGGCA
TTTAAGCGAA AAACCGCCCA TAATCTGAAA TTGCAGGCGG ATTTACGCCA GGTGGCTGAT
GAGCTGACCG AGCATAAAAA GGCTCTCGAA CAAACCGTGG CCACGCGGAC CCAGGAATTG
GCCGAAGCCA ACCTGCGCCT CGATGCGGAG GCCAAAGGCC ACGCTAAGGC AAGAATCGTT
GCCGAGGAGG CGAGTCAGGC AAAATCCCAA TTCTTGGCGA CCATGAGTCA TGAAATTCGC
ACCCCGCTCA ATGGTTTACT CGGGACGCTT ACCCTGCTCG GCCATAGCCA GTTACCGCCC
GCGCAGCAAC AGATGCTCGC GTTGTCGCAA TATAGCGGCA CGCTGCTGCA AACCGTGCTG
AGCGATATTC TCGATTTCTC CCGCCTCGAG CAGGGTAATT TAACCAATGA GCCGCGGCCA
ACGGATATCA ACGCCCTGCT CGATGAAGTG CTGGCGATCA TGGTGGCGGG CGCCAATTTG
GCGGGATTGA GCCTAAGGCT GAATCGTCCC CAGTTACCCG CGTGTATTCA GATCGATGGC
CCTAAGCTGA GGCAAGTGCT GTTTAACTTG ATTGGTAACG GCATTAAATT CACCCCCGAA
GGCGGCGTGA GTCTCAATGT CAGCGTACGA GGCGATAAGT TAGCCTTTGT GGTGGCCGAT
ACCGGCGTGG GGATTGCGCC CGAAGTGCGC GAGCAGTTAT TTATGCCTTA CTGCGTATTG
CCTAATCAGG GGCGCAGCCG TGGGACAGGC TTAGGGCTTG CCATCTGCAA ACAGTTAGTT
GAACTGATGG ATGCCGAGGG GCCGGGAATT TGGGTCAAGA GCGAGCCAGG CAAGGGCAGC
GAGTTTGGTT TTGAGCTGAG CTTTACCCAA TGTGACAAGG CATTGGATAC GCAAACTCAG
GTGCAAAAAC GGGTTAATCC CCAACGGGTG TTAGTGATTG AAGACAACAA GGTCAATGCC
ATGGTCGCGC AGGGATTTTT GGCGCATTTA GGCCACAGCT CCAGCTTGGC CGTCAGTTGT
CAGCAGGCGC TGGCGCATGT GAGTGGCGAT AAGGCATTCG ATGCCGTGAT GCTCGATATT
CAGCTGAGTG ATGGCTCGGG ACTCACGCTA TTACCCCAGT TAAAGGCGTT ATTCGCCAAT
GACAATGTGA AGTTCGCTGC CTTTACCGCG CAGATGCAAA CGGAGGATCT TAGCCTGTAT
CGGGAGGCTG GGTTTGATAC TGTGTTAGCC AAACCCTTGA GCCTGCAAAC CCTGACAGAA
TGGTTAGGCG TTGCGCGTGT GCCAGCTTCA ATGCCTGCTT TACCGTATGA GTCATCGTCG
CAATCGGCAC AATCACTTCA ATCGCCAAAT CAGGCAGAAT CTACCAGCCA GAGCCATCAA
GCTGAAACCT TGTTAGATCT TAACCAGTTA CAGCAAGATC TTGAGGTCTT AGGCGTGAAA
GCCGTGAGTG ATATTTTGGC GCTCTATCGA TGCTCCAGTG CCGAGCAAAT TGAGCGACTC
TCGGCGCTAA CCTCTGTGGC GCATTTCAGC GAGGGCGCAA AACTATTGCA TGCGCTTAAG
GGCAGCAGTG CCAGCATGGG GCTAAAAGCA CTGACCGAGT GTTGTCAGCA GTGGGAGAAA
ACACTCAACA CCACAGGGGA AAATGTATTG GATAGTAAAG TCGTGGCTGA ATTAACCGCC
TGCTGGCAGG TGTCGATGAC AGCGCTTGAG CAATGGCTCG CAAGACAGAA TTAG
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| Protein sequence | MAPLSLSRSS LTGRLMLAFG VLGVLLLLLV SLGSLSLHWL KQADSYLYEE SLPASQAARQ
LVQASNALSD GVTQLGQVED ERQREFIGRK LSLESATMLN SIKVLLTLDV NEDNHLSVLA
GQIIEQLTLL GKSVGQRITL GDELQLRARE LSVAAGHASE LLQSELAVVD SAILAKLSQS
YPDMAGDKRS GQLLDDVIER ELDVQEQLNR ALKLVHQIAL LSQLFEASEL QSELQLSVPR
LLATFASTTP SHPAAQSKPV LGTAIEQASS AVTQPPRGDV GIDLMALTTV SELIRDPGRL
KALKAELAIL LHTPKIIKLQ RELSQSLQRQ QRQQQELAEK LYSLNTLVDS ALNQQQQRAE
LARSDYLMQL SYARLGLWGT GILMLVIIGV VVYRVIYRGI ALRLNQATEA MSRLSLGDTN
VSLDAHGDDE LTAMANAIEA FKRKTAHNLK LQADLRQVAD ELTEHKKALE QTVATRTQEL
AEANLRLDAE AKGHAKARIV AEEASQAKSQ FLATMSHEIR TPLNGLLGTL TLLGHSQLPP
AQQQMLALSQ YSGTLLQTVL SDILDFSRLE QGNLTNEPRP TDINALLDEV LAIMVAGANL
AGLSLRLNRP QLPACIQIDG PKLRQVLFNL IGNGIKFTPE GGVSLNVSVR GDKLAFVVAD
TGVGIAPEVR EQLFMPYCVL PNQGRSRGTG LGLAICKQLV ELMDAEGPGI WVKSEPGKGS
EFGFELSFTQ CDKALDTQTQ VQKRVNPQRV LVIEDNKVNA MVAQGFLAHL GHSSSLAVSC
QQALAHVSGD KAFDAVMLDI QLSDGSGLTL LPQLKALFAN DNVKFAAFTA QMQTEDLSLY
REAGFDTVLA KPLSLQTLTE WLGVARVPAS MPALPYESSS QSAQSLQSPN QAESTSQSHQ
AETLLDLNQL QQDLEVLGVK AVSDILALYR CSSAEQIERL SALTSVAHFS EGAKLLHALK
GSSASMGLKA LTECCQQWEK TLNTTGENVL DSKVVAELTA CWQVSMTALE QWLARQN
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