| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1038 |
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| Symbol | deoA |
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| ID | 4251111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1211341 |
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| End bp | 1212672 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638117611 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_733175 |
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| Protein GI | 113969382 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.101588 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000000837764 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTTTCTAG CTCAGGAAAT TATACGTAAG AAACGCAATG GGTTAGCCTT AAGCGCCGAA
GAGATCCAGT TCTTCGTTAA GGGTATAACC ACTAATGCAG TGTCGGAAGG TCAGATCGCC
GCATTAGGCA TGGCTGTGTA TTTTAATGAC ATGAATATGG ATGAAAGAAT CGCTTTGACC
ACGGCAATGC GCGATTCTGG CACTGTACTC AATTGGCAAT CACTTGGTCT TAATGGCCCA
GTCATCGATA AACACAGTAC TGGTGGTGTC GGTGATGTGA TTAGTCTCAT GCTCGGCCCC
ATGGCTGCGG CTTGCGGTGG TTATGTGCCG ATGATTTCGG GTCGCGGACT CGGACACACA
GGCGGTACGC TCGATAAGTT CGACGCTATT CCCGGTTATC AAACCGAACC TTCGAGTGAA
TTGTTCCGCA AAGTAGTTAA AGACGTTGGT GTGGCGATTA TCGGCCAAAC TGGCGATCTG
GTTCCCGCCG ATAAACGTTT TTATTCCATC CGTGACAACA CTGCGACCGT TGAATCCATC
TCCCTCATTA CCGCCTCTAT TCTCTCTAAG AAATTAGCTT GTAGTCTCGA TGCATTGGCG
ATGGACGTCA AAGTCGGTAG CGGCGCATTT ATGCCAACCT ACGAAGCCTC TGAAGAGCTT
GCACGCAGTA TTGCGGCGGT AGCTAATGGC GCAGGCACTA AAACGACGGC CTTACTCACC
GACATGAACC AAGTATTGGC CTCATGTGCG GGTAATGCGG TTGAAGTGAA AGAAGCCATC
GACTTCCTAA CTGGTGCTTA TCGTAATCCT CGTCTGTACG CTGTGACTAT GGGGCTTTGT
GCCGAGATGT TACTCCTAGG CGGCCTCGCC ACCGATGAAG CGGATGCCCG TGCCAAGTTA
AATCGAGTAT TAGATAACGG CCGCGCTGCC GAGATCTTTG GCAAGATGGT TTCAGGCCTC
GGTGGCCCAG TCGATTTTGT TGAAAATTAC AGTAAGTACT TACCGCAATC GCAAATTATT
CGCCCTGTCT TTGCGGATAC CCAAGGTTAT GCCCACAGCA TGGACACCCG TGAACTCGGT
TTAGCCGTGG TTACCTTAGG TGGTGGTCGT CGCAAGCCTG GTGATGCACT CGACTACAGT
GTTGGTCTGA CGCAAGTCTG TGCCCTTGGC GATAAGATTG ATGCTTCAAC GCCGATTGCC
GTGATCCACG CGCAATCTGA AGATGCCTTT GCTCAGGCGG AAGAAGCCGT GAAAAAAGCG
ATTCGTATTG ATGAAGTCGC TCCAGAAAAA ACACCTGAGA TCTATGCTTA TATCCGAGCA
GCGGATCTTT AA
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| Protein sequence | MFLAQEIIRK KRNGLALSAE EIQFFVKGIT TNAVSEGQIA ALGMAVYFND MNMDERIALT
TAMRDSGTVL NWQSLGLNGP VIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT
GGTLDKFDAI PGYQTEPSSE LFRKVVKDVG VAIIGQTGDL VPADKRFYSI RDNTATVESI
SLITASILSK KLACSLDALA MDVKVGSGAF MPTYEASEEL ARSIAAVANG AGTKTTALLT
DMNQVLASCA GNAVEVKEAI DFLTGAYRNP RLYAVTMGLC AEMLLLGGLA TDEADARAKL
NRVLDNGRAA EIFGKMVSGL GGPVDFVENY SKYLPQSQII RPVFADTQGY AHSMDTRELG
LAVVTLGGGR RKPGDALDYS VGLTQVCALG DKIDASTPIA VIHAQSEDAF AQAEEAVKKA
IRIDEVAPEK TPEIYAYIRA ADL
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